/*
* Copyright (c) 2012. The Genome Analysis Centre, Norwich, UK
* MISO project contacts: Robert Davey, Mario Caccamo @ TGAC
* *********************************************************************
*
* This file is part of MISO.
*
* MISO is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* MISO is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with MISO. If not, see <http://www.gnu.org/licenses/>.
*
* *********************************************************************
*/
package uk.ac.bbsrc.tgac.miso.core.service.integration.factory;
import uk.ac.bbsrc.tgac.miso.core.data.SequencerReference;
import uk.ac.bbsrc.tgac.miso.core.service.integration.strategy.interrogator.SequencerInterrogator;
import uk.ac.bbsrc.tgac.miso.core.service.integration.strategy.interrogator.SolidSequencerInterrogationStrategy;
import uk.ac.bbsrc.tgac.miso.core.data.type.PlatformType;
import uk.ac.bbsrc.tgac.miso.core.exception.InterrogationException;
import uk.ac.bbsrc.tgac.miso.core.service.integration.strategy.interrogator.IlluminaSequencerInterrogationStrategy;
import uk.ac.bbsrc.tgac.miso.core.service.integration.strategy.interrogator.LS454SequencerInterrogationStrategy;
/**
* A factory to build SequencerInterrogators
*
* @author Rob Davey
* @date 06-Sep-2010
* @since 0.0.2
*/
public class SequencerInterrogatorFactory {
/**
* Builds a SequencerInterrogator object from a given SequencerReference
*
* @param sr of type SequencerReference
* @return SequencerInterrogator
* @throws InterrogationException when an unsupported PlatformType is specified
*/
public static SequencerInterrogator getSequencerInterrogator(SequencerReference sr) throws InterrogationException {
if (sr.getPlatform().getPlatformType().equals(PlatformType.ILLUMINA)) {
return new SequencerInterrogator(new IlluminaSequencerInterrogationStrategy(), sr);
}
else if (sr.getPlatform().getPlatformType().equals(PlatformType.LS454)) {
return new SequencerInterrogator(new LS454SequencerInterrogationStrategy(), sr);
}
else if (sr.getPlatform().getPlatformType().equals(PlatformType.SOLID)) {
return new SequencerInterrogator(new SolidSequencerInterrogationStrategy(), sr);
}
else if (sr.getPlatform().getPlatformType().equals(PlatformType.IONTORRENT)) {
//return new SequencerInterrogator(new SolidSequencerInterrogationStrategy(), sr);
throw new InterrogationException("Unsupported PlatformType");
}
else if (sr.getPlatform().getPlatformType().equals(PlatformType.PACBIO)) {
//return new SequencerInterrogator(new SolidSequencerInterrogationStrategy(), sr);
throw new InterrogationException("Unsupported PlatformType");
}
else {
throw new InterrogationException("Unrecognised PlatformType");
}
}
}