/*
* Copyright (c) 2012. The Genome Analysis Centre, Norwich, UK
* MISO project contacts: Robert Davey, Mario Caccamo @ TGAC
* *********************************************************************
*
* This file is part of MISO.
*
* MISO is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* MISO is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with MISO. If not, see <http://www.gnu.org/licenses/>.
*
* *********************************************************************
*/
package uk.ac.bbsrc.tgac.miso.core.data.impl;
import com.eaglegenomics.simlims.core.SecurityProfile;
import com.eaglegenomics.simlims.core.User;
import uk.ac.bbsrc.tgac.miso.core.data.AbstractPlate;
import uk.ac.bbsrc.tgac.miso.core.data.Plate;
import uk.ac.bbsrc.tgac.miso.core.data.Plateable;
import uk.ac.bbsrc.tgac.miso.core.data.Pool;
import java.io.Serializable;
import java.util.*;
/**
* uk.ac.bbsrc.tgac.miso.core.data.impl
* <p/>
* Info
*
* @author Rob Davey
* @date 13-Sep-2011
* @since 0.1.1
*/
public class PlateImpl<T extends Plateable> extends AbstractPlate<LinkedList<T>, T> implements Serializable {
public LinkedList<T> elements = new LinkedList<T>();
private Set<Pool<Plate<LinkedList<T>, T>>> pools = new HashSet<Pool<Plate<LinkedList<T>, T>>>();
private int size = 96;
public PlateImpl() {
setSecurityProfile(new SecurityProfile());
}
public PlateImpl(int size) {
setSecurityProfile(new SecurityProfile());
this.size = size;
}
public PlateImpl(int size, User user) {
setSecurityProfile(new SecurityProfile(user));
this.size = size;
}
@Override
public int getSize() {
if (elements.isEmpty()) {
return this.size;
}
return elements.size();
}
@Override
public void setSize(int size) throws Exception {
if (size != this.size) {
throw new Exception("Unable to set size of a plate once it has been constructed");
}
}
@Override
public LinkedList<T> getElements() {
return elements;
}
@Override
public void setElements(LinkedList<T> elements) {
this.elements = elements;
}
@Override
public void addElement(T o) {
elements.add(o);
}
@Override
public Class getElementType() {
return Plateable.class;
}
@Override
public Collection<T> getInternalPoolableElements() {
return getElements();
}
@Override
public Set<Pool<Plate<LinkedList<T>, T>>> getPools() {
return pools;
}
}