/*
* Copyright (c) 2007-2011 by The Broad Institute of MIT and Harvard. All Rights Reserved.
*
* This software is licensed under the terms of the GNU Lesser General Public License (LGPL),
* Version 2.1 which is available at http://www.opensource.org/licenses/lgpl-2.1.php.
*
* THE SOFTWARE IS PROVIDED "AS IS." THE BROAD AND MIT MAKE NO REPRESENTATIONS OR
* WARRANTES OF ANY KIND CONCERNING THE SOFTWARE, EXPRESS OR IMPLIED, INCLUDING,
* WITHOUT LIMITATION, WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR
* PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS, WHETHER
* OR NOT DISCOVERABLE. IN NO EVENT SHALL THE BROAD OR MIT, OR THEIR RESPECTIVE
* TRUSTEES, DIRECTORS, OFFICERS, EMPLOYEES, AND AFFILIATES BE LIABLE FOR ANY DAMAGES
* OF ANY KIND, INCLUDING, WITHOUT LIMITATION, INCIDENTAL OR CONSEQUENTIAL DAMAGES,
* ECONOMIC DAMAGES OR INJURY TO PROPERTY AND LOST PROFITS, REGARDLESS OF WHETHER
* THE BROAD OR MIT SHALL BE ADVISED, SHALL HAVE OTHER REASON TO KNOW, OR IN FACT
* SHALL KNOW OF THE POSSIBILITY OF THE FOREGOING.
*/
package org.broad.igv.gs;
/**
* @author Jim Robinson
* @date 8/10/11
*/
/*
* Copyright (c) 2007-2011 by The Broad Institute of MIT and Harvard. All Rights Reserved.
*
* This software is licensed under the terms of the GNU Lesser General Public License (LGPL),
* Version 2.1 which is available at http://www.opensource.org/licenses/lgpl-2.1.php.
*
* THE SOFTWARE IS PROVIDED "AS IS." THE BROAD AND MIT MAKE NO REPRESENTATIONS OR
* WARRANTES OF ANY KIND CONCERNING THE SOFTWARE, EXPRESS OR IMPLIED, INCLUDING,
* WITHOUT LIMITATION, WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR
* PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS, WHETHER
* OR NOT DISCOVERABLE. IN NO EVENT SHALL THE BROAD OR MIT, OR THEIR RESPECTIVE
* TRUSTEES, DIRECTORS, OFFICERS, EMPLOYEES, AND AFFILIATES BE LIABLE FOR ANY DAMAGES
* OF ANY KIND, INCLUDING, WITHOUT LIMITATION, INCIDENTAL OR CONSEQUENTIAL DAMAGES,
* ECONOMIC DAMAGES OR INJURY TO PROPERTY AND LOST PROFITS, REGARDLESS OF WHETHER
* THE BROAD OR MIT SHALL BE ADVISED, SHALL HAVE OTHER REASON TO KNOW, OR IN FACT
* SHALL KNOW OF THE POSSIBILITY OF THE FOREGOING.
*/
/*
* To change this template, choose Tools | Templates
* and open the template in the editor.
*/
import org.apache.log4j.Logger;
import org.broad.igv.gs.GSFileBrowser;
import org.broad.igv.gs.dm.DMUtils;
import org.broad.igv.session.Session;
import org.broad.igv.session.SessionWriter;
import org.broad.igv.ui.IGV;
import org.broad.igv.ui.UIConstants;
import org.broad.igv.ui.WaitCursorManager;
import org.broad.igv.ui.action.MenuAction;
import org.broad.igv.ui.action.SaveSessionMenuAction;
import javax.swing.*;
import java.awt.event.ActionEvent;
import java.io.File;
import java.io.FileOutputStream;
/**
* @author jrobinso
*/
public class GSSaveSessionMenuAction extends MenuAction {
static Logger log = Logger.getLogger(SaveSessionMenuAction.class);
// TODO -- The batch referenceFrame is likely to be used by many actions. Move this
// member to a base class ?
IGV mainFrame;
/**
* Constructs ...
*
* @param label
* @param mainFrame
*/
public GSSaveSessionMenuAction(String label, IGV mainFrame) {
super(label);
this.mainFrame = mainFrame;
setToolTipText("Save session to GenomeSpace");
}
/**
* Method description
*
* @param e
*/
@Override
public void actionPerformed(ActionEvent e) {
WaitCursorManager.CursorToken token = null;
try {
String currentSessionFilePath = mainFrame.getSession().getPath();
String initFile = currentSessionFilePath == null ? UIConstants.DEFAULT_SESSION_FILE : currentSessionFilePath;
String sessionName = (new File(initFile)).getName();
GSFileBrowser gsFileBrowser = new GSFileBrowser(IGV.getMainFrame(), GSFileBrowser.Mode.SAVE);
gsFileBrowser.setVisible(true);
String gsPath = gsFileBrowser.getPath();
if (gsPath == null) return;
if (!gsPath.endsWith(".xml")) {
gsPath += ".xml";
}
File tmpDir = new File(System.getProperty("java.io.tmpdir"), System.getProperty("user.name"));
if(!tmpDir.exists()) {
tmpDir.mkdirs();
}
sessionName = (new File(gsPath)).getName();
final File sessionFile = new File(tmpDir, sessionName);
mainFrame.setStatusBarMessage("Saving session to " + sessionFile.getAbsolutePath());
FileOutputStream out = null;
token = WaitCursorManager.showWaitCursor();
Session currentSession = mainFrame.getSession();
currentSession.setPath(sessionFile.getAbsolutePath());
(new SessionWriter()).saveSession(currentSession, sessionFile);
DMUtils.uploadFile(sessionFile, gsPath);
sessionFile.delete();
} catch (Exception e2) {
JOptionPane.showMessageDialog(mainFrame.getMainFrame(), "Error saving session file " + "(" + e2.getMessage() + ")");
log.error("Failed to save session!", e2);
} finally {
if (token != null) WaitCursorManager.removeWaitCursor(token);
mainFrame.resetStatusMessage();
}
}
}