/*
* $RCSfile$
* $Author: egonw $
* $Date: 2007-01-04 17:26:00 +0000 (Thu, 04 Jan 2007) $
* $Revision: 7634 $
*
* Copyright (C) 1997-2008 Stefan Kuhn
*
* Contact: cdk-jchempaint@lists.sourceforge.net
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU Lesser General Public License
* as published by the Free Software Foundation; either version 2.1
* of the License, or (at your option) any later version.
* All we ask is that proper credit is given for our work, which includes
* - but is not limited to - adding the above copyright notice to the beginning
* of your source code files, and to any copyright notice that you may distribute
* with programs based on this work.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA.
*/
package org.openscience.jchempaint.action;
import java.awt.event.ActionEvent;
import java.util.ArrayList;
import java.util.Iterator;
import java.util.List;
import javax.swing.JOptionPane;
import org.openscience.cdk.PseudoAtom;
import org.openscience.cdk.interfaces.IAtom;
import org.openscience.cdk.interfaces.IBond;
import org.openscience.cdk.interfaces.IChemObject;
import org.openscience.cdk.interfaces.IPseudoAtom;
import org.openscience.cdk.isomorphism.matchers.RGroupQuery;
import org.openscience.jchempaint.controller.AddAtomModule;
import org.openscience.jchempaint.controller.AddBondDragModule;
import org.openscience.jchempaint.GT;
;
/**
* Converts to and from pseudo atoms
*/
public class ConvertToPseudoAtomAction extends JCPAction {
private static final long serialVersionUID = -598284013998335002L;
public void actionPerformed(ActionEvent event) {
logger.debug("Converting to: ", type);
IChemObject object = getSource(event);
Iterator<IAtom> atomsInRange = null;
if (object == null){
//this means the main menu was used
if(jcpPanel.getRenderPanel().getRenderer().getRenderer2DModel().getSelection().isFilled())
atomsInRange=jcpPanel.getRenderPanel().getRenderer().getRenderer2DModel().getSelection().getConnectedAtomContainer().atoms().iterator();
}else if (object instanceof IAtom)
{
List<IAtom> atoms = new ArrayList<IAtom>();
atoms.add((IAtom) object);
atomsInRange = atoms.iterator();
} else
{
List<IAtom> atoms = new ArrayList<IAtom>();
atoms.add(jcpPanel.getRenderPanel().getRenderer().getRenderer2DModel().getHighlightedAtom());
atomsInRange = atoms.iterator();
}
if(atomsInRange==null)
return;
String label = type;
if(type.equals("RX")) {
boolean inputOkay=false;
do {
label = JOptionPane.showInputDialog(GT.get("Enter label"), "R");
if (label == null)
return;
if(label.startsWith("R") && label.length()>1 && !RGroupQuery.isValidRgroupQueryLabel(label))
JOptionPane.showMessageDialog(null, GT.get("This is not a valid R-group label.\nPlease label in range R1 .. R32"));
else
inputOkay=true;
}
while (!inputOkay);
}
range:
while(atomsInRange.hasNext()){
IAtom atom = atomsInRange.next();
if(type.equals("normal")){
PseudoAtom pseudo = (PseudoAtom)atom;
IAtom normal = pseudo.getBuilder().newInstance(IPseudoAtom.class,pseudo);
normal.setSymbol("C");
jcpPanel.get2DHub().replaceAtom(normal,pseudo);
}else {
jcpPanel.get2DHub().convertToPseudoAtom(atom,label);
AddAtomModule newActiveModule = new AddAtomModule(jcpPanel.get2DHub(), IBond.Stereo.NONE);
if(jcpPanel.get2DHub().getActiveDrawModule() instanceof AddBondDragModule)
newActiveModule=new AddAtomModule(jcpPanel.get2DHub(), ((AddBondDragModule)jcpPanel.get2DHub().getActiveDrawModule()).getStereoForNewBond());
else if(jcpPanel.get2DHub().getActiveDrawModule() instanceof AddAtomModule)
newActiveModule=new AddAtomModule(jcpPanel.get2DHub(), ((AddAtomModule)jcpPanel.get2DHub().getActiveDrawModule()).getStereoForNewBond());
newActiveModule.setID(label);
jcpPanel.get2DHub().setActiveDrawModule(newActiveModule);
jcpPanel.get2DHub().getController2DModel().setDrawPseudoAtom(true);
jcpPanel.get2DHub().getController2DModel().setDrawElement(label);
jcpPanel.get2DHub().getController2DModel().setDrawIsotopeNumber(0); }
}
jcpPanel.get2DHub().updateView();
}
}