package de.lmu.ifi.dbs.elki.algorithm.clustering.correlation;
/*
This file is part of ELKI:
Environment for Developing KDD-Applications Supported by Index-Structures
Copyright (C) 2011
Ludwig-Maximilians-Universität München
Lehr- und Forschungseinheit für Datenbanksysteme
ELKI Development Team
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Affero General Public License for more details.
You should have received a copy of the GNU Affero General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
import org.junit.Test;
import de.lmu.ifi.dbs.elki.JUnit4Test;
import de.lmu.ifi.dbs.elki.algorithm.AbstractSimpleAlgorithmTest;
import de.lmu.ifi.dbs.elki.data.Clustering;
import de.lmu.ifi.dbs.elki.data.DoubleVector;
import de.lmu.ifi.dbs.elki.data.model.Model;
import de.lmu.ifi.dbs.elki.database.Database;
import de.lmu.ifi.dbs.elki.utilities.ClassGenericsUtil;
import de.lmu.ifi.dbs.elki.utilities.optionhandling.ParameterException;
import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.ListParameterization;
/**
* Performs a full ORCLUS run, and compares the result with a clustering derived
* from the data set labels. This test ensures that ORCLUS performance doesn't
* unexpectedly drop on this data set (and also ensures that the algorithms
* work, as a side effect).
*
* @author Elke Achtert
* @author Katharina Rausch
*/
public class TestORCLUSResults extends AbstractSimpleAlgorithmTest implements JUnit4Test {
/**
* Run ORCLUS with fixed parameters and compare the result to a golden
* standard.
*
* @throws ParameterException on errors.
*/
@Test
public void testORCLUSResults() {
Database db = makeSimpleDatabase(UNITTEST + "correlation-hierarchy.csv", 450);
ListParameterization params = new ListParameterization();
// these parameters are not picked too smartly - room for improvement.
params.addParameter(ORCLUS.K_ID, 3);
params.addParameter(ORCLUS.L_ID, 1);
params.addParameter(ORCLUS.SEED_ID, 2);
// setup algorithm
ORCLUS<DoubleVector> orclus = ClassGenericsUtil.parameterizeOrAbort(ORCLUS.class, params);
testParameterizationOk(params);
// run ORCLUS on database
Clustering<Model> result = orclus.run(db);
testFMeasureHierarchical(db, result, 0.789113);
testClusterSizes(result, new int[] { 22, 27, 401 });
}
/**
* Run ORCLUS with fixed parameters and compare the result to a golden
* standard.
*
* @throws ParameterException on errors.
*/
@Test
public void testORCLUSSkewedDisjoint() {
Database db = makeSimpleDatabase(UNITTEST + "correlation-skewed-disjoint-3-5d.ascii", 601);
// Setup algorithm
ListParameterization params = new ListParameterization();
params.addParameter(ORCLUS.K_ID, 3);
params.addParameter(ORCLUS.L_ID, 4);
params.addParameter(ORCLUS.SEED_ID, 9);
ORCLUS<DoubleVector> orclus = ClassGenericsUtil.parameterizeOrAbort(ORCLUS.class, params);
testParameterizationOk(params);
// run ORCLUS on database
Clustering<Model> result = orclus.run(db);
testFMeasure(db, result, 0.8687866);
testClusterSizes(result, new int[] { 170, 200, 231 });
}
}