Package vsv

Examples of vsv.VSVModel.initialize()

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    Recorder.setHostDirectory("/Users/jaywarrick/Desktop/JavaModelOutputs");
    // Recorder.setHostDirectory("C:\\Users\\ctimm\\Desktop\\JavaModelOutputs");
   
    TestSim sim = new TestSim();
    VSVModel model = new VSVModel(); // initializes the model (cell, virus and reactions)
    model.initialize();
    sim.setParams(model, 6 * 60 * 60, 1.0, 15 * 60); // sets the simulation parameters
    sim.call();
   
  }
 
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    for (DimensionMap params : this.paramTable.getMapIterator())
    {
      // Create the VSVModel to simulate and set the parameters
      VSVModel model = new VSVModel();
      model.initialize();
      model.setParams(params);
     
      // Set up the simulation;
      TestSim sim = new TestSim();
      sim.setParams(model, this.simDuration * 60 * 60, this.dt, this.recorderInterval * 60);
 
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