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@Override protected MaximumContextualMolecule asMolecule(Graph graphFromModel) { SimpleContextualMolecule result = new SimpleContextualMolecule(); result.addAll(deNaturalize(graphFromModel)); result.markFinalized(); return result; } }.readComponent(new ComponentDirectory(moleculeRef.getURIRef())); }
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.replaceNode( molecule, orig, current, new SimpleContextualMolecule()); replacement.markFinalized(); cMolecules.add(replacement); } catch (SourceNodeNotFoundException e) { cMolecules.add(molecule); } }