Examples of org.openbel.framework.core.compiler.expansion.ExpansionService.expandTerms()

Package org.openbel.framework.core.compiler.expansion

Class org.openbel.framework.core.compiler.expansion.ExpansionService

Examples of org.openbel.framework.core.compiler.expansion.ExpansionService.expandTerms()

org.openbel.framework.core.compiler.expansion.ExpansionService.expandTerms()
Expand terms in the {@link ProtoNetwork proto network} based on a setof {@link TermExpansionRule term expansion rules}. @param doc the original {@link Document document} needed as a dependencywhen using {@link ProtoNetworkBuilder proto network builder} @param pn the {@link ProtoNetwork proto network} @see TermExpansionRule

     */
    private ProtoNetwork merge(Document a, Document b) {
        ExpansionService es = new ExpansionServiceImpl();
        ProtoNetworkBuilder builder = new ProtoNetworkBuilder(a);
        ProtoNetwork networkA = builder.buildProtoNetwork();
        es.expandTerms(a, networkA);
        builder = new ProtoNetworkBuilder(b);
        ProtoNetwork n2 = builder.buildProtoNetwork();
        es.expandTerms(b, n2);
        ProtoNetworkMerger merger = new ProtoNetworkMerger();
        merger.merge(networkA, n2);

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        ProtoNetworkBuilder builder = new ProtoNetworkBuilder(a);
        ProtoNetwork networkA = builder.buildProtoNetwork();
        es.expandTerms(a, networkA);
        builder = new ProtoNetworkBuilder(b);
        ProtoNetwork n2 = builder.buildProtoNetwork();
        es.expandTerms(b, n2);
        ProtoNetworkMerger merger = new ProtoNetworkMerger();
        merger.merge(networkA, n2);
        return networkA;
    }

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