Examples of org.openbel.framework.compiler.DefaultPhaseTwo.stage2LoadNamespaceEquivalences()

Class org.openbel.framework.compiler.DefaultPhaseTwo

Examples of org.openbel.framework.compiler.DefaultPhaseTwo.stage2LoadNamespaceEquivalences()

org.openbel.framework.compiler.DefaultPhaseTwo.stage2LoadNamespaceEquivalences()
Executes stage two loading of namespace equivalence indices. The namespace equivalences are determined from the loaded {@link ResourceIndex}. @return {@link Set} of {@link EquivalenceDataIndex}, the set of equivalence data indices, which may by empty but not null @throws EquivalenceMapResolutionFailure Thrown if the equivalence mapfile could not be resolved


        assertThat("test protonetwork is null", pn, notNullValue());


        final Set<EquivalenceDataIndex> equivs;
        try {
            equivs = p2.stage2LoadNamespaceEquivalences();
        } catch (EquivalenceMapResolutionFailure e) {
            e.printStackTrace();
            fail("encountered exception when loading equivalences");
            return;
        }

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