Package org.openbel.framework.common.model

Examples of org.openbel.framework.common.model.Term.toBELShortForm()

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            try {
                List<BelTerm> terms = kAMStore.getSupportingTerms(kamNode);
                if (!terms.isEmpty()) {
                    BelTerm bt = terms.get(0);
                    Term t = BELParser.parseTerm(bt.getLabel());
                    label = displayLongForm ? t.toBELLongForm() : t
                            .toBELShortForm();
                }
            } catch (Exception e) {
                // TODO exception
            }
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                final BelTerm term = terms.get(0);
                final Term ts = BELParser.parseTerm(term.getLabel());
                final Term converted = convert(ts, param);

                cached = displayLongForm ? converted.toBELLongForm()
                        : converted.toBELShortForm();
                labelCache.put(nodeLabel, cached);
                return cached;
            }

            // if there are no supporting terms, return node label,
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            // invalid BEL
            return null;
        }

        // convert to short form
        String shortForm = t.toBELShortForm();

        // 1: short circuit; try by kam node label
        PreparedStatement ps = getPreparedStatement(SELECT_KAM_NODE_BY_LABEL_SQL);
        ResultSet rset = null;
        try {
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            try {
                List<BelTerm> terms = kAMStore.getSupportingTerms(kamNode);
                if (!terms.isEmpty()) {
                    BelTerm bt = terms.get(0);
                    Term t = BELParser.parseTerm(bt.getLabel());
                    label = t.toBELShortForm();
                }
            } catch (Exception e) {
                // TODO exception
            }
            labelCache.put(kamNode.getLabel(), label);
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            } catch (Exception e) {
                return null;
            }
            Term converted = convert(parsed);

            return displayLongForm ? converted.toBELLongForm() : converted
                    .toBELShortForm();
        }
        return null;
    }
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