Package org.jmol.adapter.smarter

Examples of org.jmol.adapter.smarter.Atom.scale()

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      if (Float.isNaN(x) || Float.isNaN(y) || Float.isNaN(z))
        break;
      Atom atom = atomSetCollection.addNewAtom();
      atom.atomName = atomName + (++atomCountInFirstModel);
      atom.set(x, y, z);
      atom.scale(ANGSTROMS_PER_BOHR);
      atomNames.add(atomName);
    }
  }
 
  protected void readAtomsInBohrCoordinates() throws Exception {
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        break;
      Atom atom = atomSetCollection.addNewAtom();
      atom.elementSymbol = getElementSymbol(parseInt(line.substring(11, 14)));
      atom.atomName = atom.elementSymbol + (++n);
      atom.set(x, y, z);
      atom.scale(ANGSTROMS_PER_BOHR);
      atomNames.add(atomName);
    }
  }
 
  private void readAtomsInAngstromCoordinates() throws Exception {
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