Package org.broadinstitute.gatk.utils

Examples of org.broadinstitute.gatk.utils.MannWhitneyU.runOneSidedTest()

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                System.out.format("%4.1f ", qual);
            System.out.println();

        }
        // we are testing that set1 (the alt bases) have lower quality scores than set2 (the ref bases)
        final Pair<Double, Double> testResults = mannWhitneyU.runOneSidedTest(MannWhitneyU.USet.SET1);

        final Map<String, Object> map = new HashMap<String, Object>();
        if (!Double.isNaN(testResults.first))
            map.put(getKeyNames().get(0), String.format("%.3f", testResults.first));
        return map;
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                System.out.format("%4.1f ", qual);
            System.out.println();

        }
        // we are testing that set1 (the alt bases) have lower quality scores than set2 (the ref bases)
        final Pair<Double, Double> testResults = mannWhitneyU.runOneSidedTest(MannWhitneyU.USet.SET1);

        final Map<String, Object> map = new HashMap<>();
        if (!Double.isNaN(testResults.first))
            map.put(getKeyNames().get(0), String.format("%.3f", testResults.first));
        return map;
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