Package org.broadinstitute.gatk.utils

Examples of org.broadinstitute.gatk.utils.GenomeLoc.split()


                split.add(head);
                break; // we are done
            } else if ( newSize > idealSplitSize ) {
                final long remainingBp = idealSplitSize - size;
                final long cutPoint = head.getStart() + remainingBp;
                GenomeLoc[] parts = head.split((int)cutPoint);
                remaining.push(parts[1]);
                remaining.push(parts[0]);
                // when we go around, head.size' = idealSplitSize - size
                // so newSize' = splitSize + head.size' = size + (idealSplitSize - size) = idealSplitSize
            } else {
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