Package org.broadinstitute.gatk.tools.walkers.haplotypecaller.readthreading

Examples of org.broadinstitute.gatk.tools.walkers.haplotypecaller.readthreading.HaplotypeGraph.edgeSet()


   @Test(dataProvider="buildByStringDataProvider")
   public void testBuildByString(final String string, final int kmerSize, final int vertexCount, final int edgeCount) {
       final HaplotypeGraph g = new HaplotypeGraph(string);
       Assert.assertEquals(g.getKmerSize(),kmerSize,g.toString());
       Assert.assertEquals(g.vertexSet().size(),vertexCount,g.toString());
       Assert.assertEquals(g.edgeSet().size(),edgeCount,g.toString());
   }

   @Test(dataProvider="equalTestDataProvider")
   public void testEquals(final HaplotypeGraph one, final HaplotypeGraph two, final boolean expected) {
      Assert.assertEquals(one.equals(two),expected);
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