Package org.broadinstitute.gatk.engine.walkers

Examples of org.broadinstitute.gatk.engine.walkers.ActiveRegionTraversalParameters.extension()


            throw new IllegalArgumentException("Active region walker " + this.walker + " requested extended events but not " +
                    "non-primary reads, an inconsistent state.  Please modify the walker");
        }

        ActiveRegionTraversalParameters annotation = walker.getClass().getAnnotation(ActiveRegionTraversalParameters.class);
        this.activeRegionExtension = this.walker.activeRegionExtension == null ? annotation.extension() : this.walker.activeRegionExtension;
        this.maxRegionSize = this.walker.activeRegionMaxSize == null ? annotation.maxRegion() : this.walker.activeRegionMaxSize;
        this.minRegionSize = annotation.minRegion();
        final double bandPassSigma = this.walker.bandPassSigma == null ? annotation.bandPassSigma() : this.walker.bandPassSigma;
        walkerHasPresetRegions = this.walker.hasPresetActiveRegions();
View Full Code Here

TOP
Copyright © 2018 www.massapi.com. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.