Package org.broadinstitute.gatk.engine

Examples of org.broadinstitute.gatk.engine.GenomeAnalysisEngine.execute()

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            engine.setReferenceMetaDataFiles(Collections.<RMDTriplet>emptyList());

            // Create the walker
            engine.setWalker(walkerType.create());

            engine.execute();
        }
    }

    private enum WalkerType {
        COUNT_READS {
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