Package org.broad.igv.util.collections

Examples of org.broad.igv.util.collections.IntArrayList.toArray()

54
55
56
57
58
59
60
61
62
63
64
        long t0 = System.currentTimeMillis();
        for (int i = 0; i < NUM_POINTS; i++) {
            al.add(i);
        }
        int[] values = al.toArray();
        assertEquals(NUM_POINTS, values.length);
        assertEquals(2, values[2]);
        System.out.println("IntArrayList time: " + (System.currentTimeMillis() - t0));
    }
View Full Code Here
183
184
185
186
187
188
189
190
191
192
193
    public int[] getStartLocations(String chr) {
        IntArrayList startLocations = this.startLocationsMap.get(chr);
        if (startLocations == null) {
            return null;
        } else {
            return startLocations.toArray();
        }
    }

    public int[] getEndLocations(String chr) {
        IntArrayList endLocations = this.endLocationsMap.get(chr);
View Full Code Here
192
193
194
195
196
197
198
199
200
201
202
    public int[] getEndLocations(String chr) {
        IntArrayList endLocations = this.endLocationsMap.get(chr);
        if (endLocations == null) {
            return null;
        } else {
            return endLocations.toArray();
        }
    }

    public float[] getData(String heading, String chr) {
        FloatArrayList data = this.dataMap.get(chr);
View Full Code Here
44
45
46
47
48
49
50
51
52
53
54
            if (boundaries[i] != lastPos) {
                lastPos = boundaries[i];
                boundaryList.add(lastPos);
            }
        }
        boundaries = boundaryList.toArray();
        return boundaries;
    }

    private static boolean nullDataCheck(float[] data) {
View Full Code Here
460
461
462
463
464
465
466
467
468
469
470
            // Loop complete
            ChromosomeData cd = new ChromosomeData(chrSummary.getName());
            cd.setProbes(probes.toArray(new String[]{}));
            cd.setStartLocations(startLocations.toArray());
            if (hasEndLocations) {
                cd.setEndLocations(endLocations.toArray());
            }

            for (String h : dataHeaders) {
                cd.setData(h, dataMap.get(h).toArray());
            }
View Full Code Here
98
99
100
101
102
103
104
105
106
107
108
            startsList.add(feat.getStartBase());
            endsList.add(feat.getEndBase());
            //valuesList.add(wi.getWigValue());
        }

        DataTile tile = new DataTile(startsList.toArray(), endsList.toArray(), valuesList.toArray(), null);
        currentInterval = new RawDataInterval(chr, start, end, tile);

        return tile;
    }
View Full Code Here
298
299
300
301
302
303
304
305
306
307
308
            startsList.add(wi.getStartBase());
            endsList.add(wi.getEndBase());
            valuesList.add(wi.getWigValue());
        }

        DataTile tile = new DataTile(startsList.toArray(), endsList.toArray(), valuesList.toArray(), null);
        currentInterval = new RawDataInterval(chr, start, end, tile);

        return tile;

    }
View Full Code Here
TOP
Copyright © 2018 www.massapi.com. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.