Package org.bioinfo.ngs.qc.qualimap.gui.threads

Examples of org.bioinfo.ngs.qc.qualimap.gui.threads.ExportHtmlThread.run()

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            AnalysisResultManager resultManager = new AnalysisResultManager(AnalysisType.BAM_QC);
            resultManager.addReporter(reporter);

            Thread exportReportThread = new ExportHtmlThread(resultManager,sampleOutdir);
            exportReportThread.run();
            loggerThread.updateProgress(100);
            loggerThread.logLine("Finished processing " + bamFilePath + "\n");
            loggerThread.logLine("BAM QC results are saved to  " + sampleOutdir + "\n");

            s.path = sampleOutdir;
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