SearchByClass<ReplaceableController> replaceableControllers = new SearchByClass<ReplaceableController>(ReplaceableController.class);
tree.traverse(replaceableControllers);
Collection<ReplaceableController> replaceableControllersRes = replaceableControllers.getSearchResults();
for (Iterator<ReplaceableController> iter = replaceableControllersRes.iterator(); iter.hasNext();) {
ReplaceableController replaceableController = iter.next();
replaceableController.resolveReplacementSubTree(root);
}
// Remove the disabled items
// For GUI runs this is done in Start.java
convertSubTree(tree);