Package org.apache.airavata.gsi.ssh.impl

Examples of org.apache.airavata.gsi.ssh.impl.PBSCluster.scpTo()

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            Cluster pbsCluster = new PBSCluster(serverInfo, authenticationInfo, CommonUtils.getPBSJobManager("/opt/torque/torque-4.2.3.1/bin/"));
            outputPath = outputPath + File.separator + jobExecutionContext.getExperimentID() + "-" + jobExecutionContext.getTaskData().getTaskID()
                    + File.separator;
            pbsCluster.makeDirectory(outputPath);
            pbsCluster.scpTo(outputPath, standardError);
            pbsCluster.scpTo(outputPath, standardOutput);
            List<DataObjectType> outputArray = new ArrayList<DataObjectType>();
            Map<String, Object> output = jobExecutionContext.getOutMessageContext().getParameters();
            Set<String> keys = output.keySet();
            for (String paramName : keys) {
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            Cluster pbsCluster = new PBSCluster(serverInfo, authenticationInfo, CommonUtils.getPBSJobManager("/opt/torque/torque-4.2.3.1/bin/"));
            outputPath = outputPath + File.separator + jobExecutionContext.getExperimentID() + "-" + jobExecutionContext.getTaskData().getTaskID()
                    + File.separator;
            pbsCluster.makeDirectory(outputPath);
            pbsCluster.scpTo(outputPath, standardError);
            pbsCluster.scpTo(outputPath, standardOutput);
            List<DataObjectType> outputArray = new ArrayList<DataObjectType>();
            Map<String, Object> output = jobExecutionContext.getOutMessageContext().getParameters();
            Set<String> keys = output.keySet();
            for (String paramName : keys) {
                ActualParameter actualParameter = (ActualParameter) output.get(paramName);
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            Set<String> keys = output.keySet();
            for (String paramName : keys) {
                ActualParameter actualParameter = (ActualParameter) output.get(paramName);
                if ("URI".equals(actualParameter.getType().getType().toString())) {
                  String downloadFile = MappingFactory.toString(actualParameter);
                  pbsCluster.scpTo(outputPath, downloadFile);
                    String fileName = downloadFile.substring(downloadFile.lastIndexOf(File.separatorChar)+1, downloadFile.length());
                    DataObjectType dataObjectType = new DataObjectType();
                    dataObjectType.setValue(outputPath + File.separatorChar + fileName);
                    dataObjectType.setKey(paramName);
                    dataObjectType.setType(DataType.URI);
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