Package net.sf.samtools

Examples of net.sf.samtools.SAMFileHeader.addComment()

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      mergeComment.append(" ").append(source.path);
    }

    resolveCollisions(list);
    SAMFileHeader header = mergeHeaders(list);
    header.addComment(mergeComment.toString());

    SAMFileWriter writer = null;
    if (params.outFile != null)
      if (!params.samFormat)
        writer = new SAMFileWriterFactory().makeBAMWriter(header, true,
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