Package net.sf.samtools

Examples of net.sf.samtools.CigarOperator.consumesReadBases()

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        lastOpLen = rfLen;
        lastOpPos = f.getPosition();
      } else
        lastOpLen += rfLen;

      if (!co.consumesReadBases())
        lastOpPos -= rfLen;
    }

    if (lastOperator != null) {
      if (lastOperator != CigarOperator.M) {
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