mainWindow.initModule();
// Activate project - bind it to the desktop's project tree
MZmineProjectImpl currentProject = (MZmineProjectImpl) projectManager
.getCurrentProject();
currentProject.activateProject();
// add desktop menu icon
for (Class<?> moduleClass : MZmineModulesList.MODULES) {
MZmineModule module = initializedModules
.get(moduleClass);