Package loci.common

Examples of loci.common.RandomAccessInputStream.seek()

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    IFD ifd = tiffParser.getFirstIFD();
    RandomAccessInputStream ras = getCZTag(ifd);
    if (ras == null) return 1;
    ras.order(littleEndian);

    ras.seek(264);
    dimensionP = ras.readInt();
    dimensionM = ras.readInt();
    ras.close();

    int nSeries = dimensionM * dimensionP;
 
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    if (ras == null) {
      imageNames.add(imageName);
      return;
    }

    ras.seek(16);

    ms.sizeZ = ras.readInt();
    ras.skipBytes(4);
    ms.sizeT = ras.readInt();
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      default:
        addSeriesMeta("DataType", "8 bit unsigned integer");
    }

    if (getMetadataOptions().getMetadataLevel() != MetadataLevel.MINIMUM) {
      ras.seek(0);
      addSeriesMeta("MagicNumber ", ras.readInt());
      addSeriesMeta("StructureSize", ras.readInt());
      addSeriesMeta("DimensionX", ras.readInt());
      addSeriesMeta("DimensionY", ras.readInt());
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      addSeriesMeta("MagicNumber ", ras.readInt());
      addSeriesMeta("StructureSize", ras.readInt());
      addSeriesMeta("DimensionX", ras.readInt());
      addSeriesMeta("DimensionY", ras.readInt());

      ras.seek(32);
      addSeriesMeta("ThumbnailX", ras.readInt());
      addSeriesMeta("ThumbnailY", ras.readInt());

      // pixel sizes are stored in meters, we need them in microns
      pixelSizeX = ras.readDouble() * 1000000;
 
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      addSeriesMeta("OriginX", originX);
      addSeriesMeta("OriginY", originY);
      addSeriesMeta("OriginZ", originZ);
    }
    else ras.seek(88);

    int scanType = ras.readShort();
    switch (scanType) {
      case 0:
        addSeriesMeta("ScanType", "x-y-z scan");
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