Package loci.common

Examples of loci.common.RandomAccessInputStream.readDouble()

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      ras.seek(32);
      addSeriesMeta("ThumbnailX", ras.readInt());
      addSeriesMeta("ThumbnailY", ras.readInt());

      // pixel sizes are stored in meters, we need them in microns
      pixelSizeX = ras.readDouble() * 1000000;
      pixelSizeY = ras.readDouble() * 1000000;
      pixelSizeZ = ras.readDouble() * 1000000;

      addSeriesMeta("VoxelSizeX", new Double(pixelSizeX));
      addSeriesMeta("VoxelSizeY", new Double(pixelSizeY));
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      addSeriesMeta("ThumbnailX", ras.readInt());
      addSeriesMeta("ThumbnailY", ras.readInt());

      // pixel sizes are stored in meters, we need them in microns
      pixelSizeX = ras.readDouble() * 1000000;
      pixelSizeY = ras.readDouble() * 1000000;
      pixelSizeZ = ras.readDouble() * 1000000;

      addSeriesMeta("VoxelSizeX", new Double(pixelSizeX));
      addSeriesMeta("VoxelSizeY", new Double(pixelSizeY));
      addSeriesMeta("VoxelSizeZ", new Double(pixelSizeZ));
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      addSeriesMeta("ThumbnailY", ras.readInt());

      // pixel sizes are stored in meters, we need them in microns
      pixelSizeX = ras.readDouble() * 1000000;
      pixelSizeY = ras.readDouble() * 1000000;
      pixelSizeZ = ras.readDouble() * 1000000;

      addSeriesMeta("VoxelSizeX", new Double(pixelSizeX));
      addSeriesMeta("VoxelSizeY", new Double(pixelSizeY));
      addSeriesMeta("VoxelSizeZ", new Double(pixelSizeZ));

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      addSeriesMeta("VoxelSizeX", new Double(pixelSizeX));
      addSeriesMeta("VoxelSizeY", new Double(pixelSizeY));
      addSeriesMeta("VoxelSizeZ", new Double(pixelSizeZ));

      originX = ras.readDouble() * 1000000;
      originY = ras.readDouble() * 1000000;
      originZ = ras.readDouble() * 1000000;

      addSeriesMeta("OriginX", originX);
      addSeriesMeta("OriginY", originY);
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      addSeriesMeta("VoxelSizeX", new Double(pixelSizeX));
      addSeriesMeta("VoxelSizeY", new Double(pixelSizeY));
      addSeriesMeta("VoxelSizeZ", new Double(pixelSizeZ));

      originX = ras.readDouble() * 1000000;
      originY = ras.readDouble() * 1000000;
      originZ = ras.readDouble() * 1000000;

      addSeriesMeta("OriginX", originX);
      addSeriesMeta("OriginY", originY);
      addSeriesMeta("OriginZ", originZ);
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      addSeriesMeta("VoxelSizeY", new Double(pixelSizeY));
      addSeriesMeta("VoxelSizeZ", new Double(pixelSizeZ));

      originX = ras.readDouble() * 1000000;
      originY = ras.readDouble() * 1000000;
      originZ = ras.readDouble() * 1000000;

      addSeriesMeta("OriginX", originX);
      addSeriesMeta("OriginY", originY);
      addSeriesMeta("OriginZ", originZ);
    }
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      overlayOffsets[1] = ras.readInt();
      overlayOffsets[2] = ras.readInt();

      channelColorsOffset = ras.readInt();

      addSeriesMeta("TimeInterval", ras.readDouble());
      ras.skipBytes(4);
      scanInformationOffset = ras.readInt();
      applicationTagOffset = ras.readInt();
      timeStampOffset = ras.readInt();
      eventListOffset = ras.readInt();
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      eventListOffset = ras.readInt();
      overlayOffsets[3] = ras.readInt();
      overlayOffsets[4] = ras.readInt();
      ras.skipBytes(4);

      addSeriesMeta("DisplayAspectX", ras.readDouble());
      addSeriesMeta("DisplayAspectY", ras.readDouble());
      addSeriesMeta("DisplayAspectZ", ras.readDouble());
      addSeriesMeta("DisplayAspectTime", ras.readDouble());

      overlayOffsets[5] = ras.readInt();
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      overlayOffsets[3] = ras.readInt();
      overlayOffsets[4] = ras.readInt();
      ras.skipBytes(4);

      addSeriesMeta("DisplayAspectX", ras.readDouble());
      addSeriesMeta("DisplayAspectY", ras.readDouble());
      addSeriesMeta("DisplayAspectZ", ras.readDouble());
      addSeriesMeta("DisplayAspectTime", ras.readDouble());

      overlayOffsets[5] = ras.readInt();
      overlayOffsets[6] = ras.readInt();
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      overlayOffsets[4] = ras.readInt();
      ras.skipBytes(4);

      addSeriesMeta("DisplayAspectX", ras.readDouble());
      addSeriesMeta("DisplayAspectY", ras.readDouble());
      addSeriesMeta("DisplayAspectZ", ras.readDouble());
      addSeriesMeta("DisplayAspectTime", ras.readDouble());

      overlayOffsets[5] = ras.readInt();
      overlayOffsets[6] = ras.readInt();
      overlayOffsets[7] = ras.readInt();
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