Package htsjdk.tribble.util

Examples of htsjdk.tribble.util.LittleEndianOutputStream.writeInt()

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            // Track line
            peakWriter.writeString("track name=" + factor + " sample=" + factor + " viewLimits=0:100 useScore=1 color=" + c);

            // Time values
            int nTimePoints = times.size();
            peakWriter.writeInt(nTimePoints);
            for (int i = 0; i < times.size(); i++) {
                peakWriter.writeInt(times.get(i));
            }

            // Path to associated signal ("tdf") files
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            // Time values
            int nTimePoints = times.size();
            peakWriter.writeInt(nTimePoints);
            for (int i = 0; i < times.size(); i++) {
                peakWriter.writeInt(times.get(i));
            }

            // Path to associated signal ("tdf") files
            String tdf = root + "/tdf/compressed/" + factor + ".merged.bam.tdf";
            peakWriter.writeString(tdf);
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                records.add(new PeakRecord(start, end, score, timeScores));
            }

            // Write out index
            indexPosition = peakWriter.getWrittenCount();
            peakWriter.writeInt(chrIndex.size());
            for (Map.Entry<String, Long> entry : chrIndex.entrySet()) {
                peakWriter.writeString(entry.getKey());
                peakWriter.writeLong(entry.getValue());
            }
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        los.writeString("Binary test file");
        los.writeFloat(Float.MAX_VALUE);
        los.writeByte(Byte.MAX_VALUE);
        los.writeShort(Short.MAX_VALUE);
        los.writeInt(Integer.MAX_VALUE);
        los.writeLong(Long.MAX_VALUE);
        los.writeDouble(Double.MAX_VALUE);

        los.close();
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