Package htsjdk.tribble.util

Examples of htsjdk.tribble.util.LittleEndianInputStream.readFloat()

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                int nDataPoints = reader.readInt();
                for (int n = 0; n < nDataPoints; n++) {
                    int start = reader.readInt();
                    int end = reader.readInt();
                    float combinedScore = reader.readFloat();
                    float[] timePointScores = new float[nTimePoints];
                    for (int i = 0; i < nTimePoints; i++) {
                        timePointScores[i] = reader.readFloat();
                    }
                    peaks.add(new Peak(chr, start, end, "", combinedScore, timePointScores));
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                    int start = reader.readInt();
                    int end = reader.readInt();
                    float combinedScore = reader.readFloat();
                    float[] timePointScores = new float[nTimePoints];
                    for (int i = 0; i < nTimePoints; i++) {
                        timePointScores[i] = reader.readFloat();
                    }
                    peaks.add(new Peak(chr, start, end, "", combinedScore, timePointScores));

                }
                return peaks;
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    @Test
    public void testRead() throws Exception {
        LittleEndianInputStream lis = new LittleEndianInputStream(new BufferedInputStream(new FileInputStream("les_test.bin")));
        assertEquals("Binary test file", lis.readString());
        assertEquals(Float.MAX_VALUE, lis.readFloat());
        assertEquals(Byte.MAX_VALUE, lis.readByte());
        assertEquals(Short.MAX_VALUE, lis.readShort());
        assertEquals(Integer.MAX_VALUE, lis.readInt());
        assertEquals(Long.MAX_VALUE, lis.readLong());
        assertEquals(Double.MAX_VALUE, lis.readDouble());
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                bdis = new DataInputStream(new ByteArrayInputStream(buffer));

            // Get TotalSummaryBlcok information
            if(isLowToHigh){
                basesCovered = lbdis.readLong();
                minVal = lbdis.readFloat();
                maxVal = lbdis.readFloat();
                sumData = lbdis.readFloat();
                sumSquares = lbdis.readFloat();
            }
            else {
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            // Get TotalSummaryBlcok information
            if(isLowToHigh){
                basesCovered = lbdis.readLong();
                minVal = lbdis.readFloat();
                maxVal = lbdis.readFloat();
                sumData = lbdis.readFloat();
                sumSquares = lbdis.readFloat();
            }
            else {
                basesCovered = bdis.readLong();
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            // Get TotalSummaryBlcok information
            if(isLowToHigh){
                basesCovered = lbdis.readLong();
                minVal = lbdis.readFloat();
                maxVal = lbdis.readFloat();
                sumData = lbdis.readFloat();
                sumSquares = lbdis.readFloat();
            }
            else {
                basesCovered = bdis.readLong();
                minVal = bdis.readFloat();
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            if(isLowToHigh){
                basesCovered = lbdis.readLong();
                minVal = lbdis.readFloat();
                maxVal = lbdis.readFloat();
                sumData = lbdis.readFloat();
                sumSquares = lbdis.readFloat();
            }
            else {
                basesCovered = bdis.readLong();
                minVal = bdis.readFloat();
                maxVal = bdis.readFloat();
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