tempContent = PtmtableContent.getPTMTableContent(peptide, ptm, nPTM, spectrum, annotationPreferences.getIonTypes(),
annotationPreferences.getNeutralLosses(), annotationPreferences.getValidatedCharges(),
spectrumMatch.getBestPeptideAssumption().getIdentificationCharge().value,
annotationPreferences.getFragmentIonAccuracy(), spectrum.getIntensityLimit(annotationPreferences.getAnnotationIntensityLimit()));
tempContent.normalize();
tableContent.addAll(tempContent);
} catch (Exception e) {
peptideShakerGUI.catchException(e);
}
}