int genScore = actualAutomaton.pairscores.computePairCompatibilityScore_general(null, constructPairsToMergeBasedOnSetsToMerge(actualAutomaton.transitionMatrix.keySet(),verticesToMergeBasedOnInitialPTA), verticesToMerge);
assert genScore >= 0;
actualAutomaton = MergeStates.mergeCollectionOfVertices(actualAutomaton, null, verticesToMerge);
}
SampleData dataSample = new SampleData(null,null);
//dataSample.difference = new DifferenceToReferenceDiff(0, 0);
//dataSample.differenceForReferenceLearner = new DifferenceToReferenceDiff(0, 0);
long inconsistencyActual = MarkovClassifier.computeInconsistency(actualAutomaton, m, checker,false);
VertID rejectVertexID = null;