this.main.log("Merging ontologies...");
IOntologyComparator ontologyComparator = new OntologyComparator(firstOntologyGraph[0], secondOntologyGraph, this.main);
IOntologyGraph ontologyGraph = ontologyComparator.mapOntologies().getFirst();
int similarity = (int) (ontologyComparator.getSimilarity() * 100);
final IGraphModelBuilder myGraphModelBuilder =
new GraphModelBuilder(firstOntologyGraph[0], secondOntologyGraph, ontologyGraph, similarity, this.main);
this.main.log("Visualising ontologies...");
GraphModel graphModel = myGraphModelBuilder.buildGraphModel(main.getGraphPane(), main.areUnmappedConceptsVisible(), main.areUnmappedConceptsWithSynsetsVisible());
OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
OWLOntology result = OntologyManager.saveOntologies(manager, firstOntologyManager.getOntology(), secondOntologyManager.getOntology());
onGraphModelBuilt(manager, result);
this.main.setGraphModel(graphModel);
ITreeBuilder firstTreeBuilder = new TreeBuilder(firstFile.getName(), firstOntologyGraph[0].getRoots());
ITreeBuilder secondTreeBuilder = new TreeBuilder(secondFile.getName(), secondOntologyGraph.getRoots());
this.main.setTrees(firstTreeBuilder.buildTree(main.areUnmappedConceptsVisible(), main.areUnmappedConceptsWithSynsetsVisible()), secondTreeBuilder.buildTree(main.areUnmappedConceptsVisible(), main.areUnmappedConceptsWithSynsetsVisible()));
int similarityCount = myGraphModelBuilder.getSimilarity();
this.main.info(String.format(
"Comparing ontology %s (blue) to %s (green). (Absolutely equal concepts are colored orange) <br> The similarity is %d %%. <br> To remove a mapping right-click on it",
firstFile.getName(), secondFile.getName(), similarityCount)
);
this.main.hideProgressBar();