Package ru.autosome.ape.calculation.findPvalue

Examples of ru.autosome.ape.calculation.findPvalue.FindPvalueBsearchBuilder


                                           new FindPvalueAPE<ModelType, BackgroundType>(pwm, collectionBackground, preciseDiscretizer, maxHashSize)));
      } else {
        result.add(new ThresholdEvaluator( pwm,
                                           new FindThresholdBsearchBuilder(thresholds_folder).thresholdCalculator(pwm),
                                           null,
                                           new FindPvalueBsearchBuilder(thresholds_folder).pvalueCalculator(pwm),
                                           null));
      }
    }
    return result;
  }
View Full Code Here


    for (MotifType motif: motifList) {
      CanFindPvalue pvalueCalculator;
      if (thresholds_folder == null) {
        pvalueCalculator = new FindPvalueAPE<MotifType, BackgroundType>(motif, background, discretizer, max_hash_size);
      } else {
        pvalueCalculator = new FindPvalueBsearchBuilder(thresholds_folder).pvalueCalculator(motif);
      }
      pwmCollection.add(new ThresholdEvaluator(motif, pvalueCalculator, motif.getName()));
    }
  }
View Full Code Here

  protected CanFindPvalue calculator() {
    if (cache_calculator == null) {
      if (thresholds_folder == null) {
        cache_calculator = new FindPvalueAPE<PWM, BackgroundModel>(motif, background, discretizer, max_hash_size);
      } else {
        cache_calculator = new FindPvalueBsearchBuilder(thresholds_folder).pvalueCalculator(motif);
      }
    }
    return cache_calculator;
  }
View Full Code Here

  protected CanFindPvalue calculator() {
    if (cache_calculator == null) {
      if (thresholds_folder == null) {
        cache_calculator = new FindPvalueAPE<DiPWM, DiBackgroundModel>(motif, background, discretizer, max_hash_size);
      } else {
        cache_calculator = new FindPvalueBsearchBuilder(thresholds_folder).pvalueCalculator(motif);
      }
    }
    return cache_calculator;
  }
View Full Code Here

TOP

Related Classes of ru.autosome.ape.calculation.findPvalue.FindPvalueBsearchBuilder

Copyright © 2018 www.massapicom. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.