Package picard.illumina.parser.fakers

Examples of picard.illumina.parser.fakers.BclFileFaker


    public ParameterizedFileUtil getUtil(final SupportedIlluminaFormat format) {
        ParameterizedFileUtil parameterizedFileUtil = utils.get(format);
        if (parameterizedFileUtil == null) {
            switch (format) {
                case Bcl:
                    final ParameterizedFileUtil bclFileUtil = new PerTilePerCycleFileUtil(".bcl", basecallLaneDir, new BclFileFaker(), lane);
                    final ParameterizedFileUtil gzBclFileUtil = new PerTilePerCycleFileUtil(".bcl.gz", basecallLaneDir, new BclFileFaker(), lane);
                    if (bclFileUtil.filesAvailable() && !gzBclFileUtil.filesAvailable()) {
                        parameterizedFileUtil = bclFileUtil;
                    } else if (!bclFileUtil.filesAvailable() && gzBclFileUtil.filesAvailable()) {
                        parameterizedFileUtil = gzBclFileUtil;
                    } else if (!bclFileUtil.filesAvailable() && !gzBclFileUtil.filesAvailable()) {
View Full Code Here

TOP

Related Classes of picard.illumina.parser.fakers.BclFileFaker

Copyright © 2018 www.massapicom. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.