Package picard.illumina.parser.fakers

Examples of picard.illumina.parser.fakers.BciFileFaker


    @Override
    public List<String> fakeFiles(final List<Integer> expectedTiles, final int[] expectedCycles,
                                  final IlluminaFileUtil.SupportedIlluminaFormat format) {
        //we need to fake a bci file for the tile index
        final BciFileFaker bciFileFaker = new BciFileFaker();
        try {
            bciFileFaker.fakeBciFile(bci, expectedTiles);
            tileIndex = new TileIndex(bci);
            faker.fakeFile(base, expectedTiles, lane, extension);
            final File[] filesMatchingRegexp = IOUtil.getFilesMatchingRegexp(base, matchPattern);
            if (filesMatchingRegexp == null || filesMatchingRegexp.length == 0) {
                dataFile = null;
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Related Classes of picard.illumina.parser.fakers.BciFileFaker

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