// Write xgmml <graph> element header
XGMMLUtility.writeStart(kam.getKamInfo().getName(), writer);
// We iterate over all the nodes in the Kam first
for (KamNode kamNode : kam.getNodes()) {
Node xNode = new Node();
xNode.id = kamNode.getId();
xNode.label = kamNode.getLabel();
xNode.function = kamNode.getFunctionType();
List<BelTerm> supportingTerms =
kAMStore.getSupportingTerms(kamNode);
XGMMLUtility.writeNode(xNode, supportingTerms, writer);
}
// Iterate over all the edges
for (KamEdge kamEdge : kam.getEdges()) {
Edge xEdge = new Edge();
xEdge.id = kamEdge.getId();
xEdge.rel = kamEdge.getRelationshipType();
KamNode knsrc = kamEdge.getSourceNode();
KamNode kntgt = kamEdge.getTargetNode();
xEdge.source = knsrc.getId();
xEdge.target = kntgt.getId();
Node src = new Node();
src.function = knsrc.getFunctionType();
src.label = knsrc.getLabel();
Node tgt = new Node();
tgt.function = kntgt.getFunctionType();
tgt.label = kntgt.getLabel();
XGMMLUtility.writeEdge(src, tgt, xEdge, writer);
}