Package org.openbel.framework.core

Examples of org.openbel.framework.core.ConversionError


        } catch (JAXBException e) {
            e.printStackTrace();
            final String name = d.getName();
            final String msg = e.getMessage();
            final Throwable cause = e;
            throw new ConversionError(name, msg, cause);
        } catch (IOException e) {
            final String name = d.getName();
            final String msg = e.getMessage();
            final Throwable cause = e;
            throw new ConversionError(name, msg, cause);
        }
    }
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            return document;
        } catch (JAXBException e) {
            final String name = f.getAbsolutePath();
            final String msg = e.getMessage();
            final Throwable cause = e;
            throw new ConversionError(name, msg, cause);
        } catch (IOException e) {
            final String name = f.getAbsolutePath();
            final String msg = e.getMessage();
            final Throwable cause = e;
            throw new ConversionError(name, msg, cause);
        }

    }
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            output.setDocument(d);
        } catch (JAXBException e) {
            final String name = file.toString();
            final String msg = e.getMessage();
            final Throwable cause = e;
            output.setConversionError(new ConversionError(name, msg, cause));
            return output;
        } catch (IOException e) {
            final String name = file.toString();
            final String msg = e.getMessage();
            final Throwable cause = e;
            output.setConversionError(new ConversionError(name, msg, cause));
            return output;
        }

        List<AnnotationDefinition> definitions = d.getDefinitions();
        if (definitions == null) {
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