Package org.obolibrary.obo2owl

Examples of org.obolibrary.obo2owl.OWLAPIObo2Owl

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            return false;
        }

        @Nullable
        IRI getIRIByIdentifier(@Nonnull String id) {
            OWLAPIObo2Owl b = new OWLAPIObo2Owl(manager);
            b.setObodoc(new OBODoc());
            return b.oboIdToIRI(id);
        }
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            } else {
                return parse(source.getDocumentIRI(), null, in);
            }
        }
        // create a translator object and feed it the OBO Document
        OWLAPIObo2Owl bridge = new OWLAPIObo2Owl(in.getOWLOntologyManager());
        OWLOntology ontology = bridge.convert(obodoc, in);
        if (ontology == in) {
            return in;
        }
        return ontology;
    }
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        }

        @Override
        public String getName(String id) {
            // convert OBO id to IRI
            OWLAPIObo2Owl obo2owl = new OWLAPIObo2Owl(
                    ont.getOWLOntologyManager());
            IRI iri = obo2owl.oboIdToIRI(id);
            // look for label of entity
            Set<OWLAnnotationAssertionAxiom> axioms = ont.getAxioms(
                    OWLAnnotationAssertionAxiom.class,
                    OWLAnnotationSubject.class, iri, Imports.INCLUDED,
                    IN_SUB_POSITION);
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Related Classes of org.obolibrary.obo2owl.OWLAPIObo2Owl

  • org.obolibrary.macro.ManchesterSyntaxTool$AdvancedEntityChecker
  • org.obolibrary.obo2owl.Obo2OWLConstants.Obo2OWLVocabulary
  • org.obolibrary.oboformat.model.Clause
  • org.obolibrary.oboformat.model.Frame
  • org.obolibrary.oboformat.model.OBODoc
  • org.obolibrary.oboformat.model.Xref
  • org.obolibrary.oboformat.parser.OBOFormatConstants.OboFormatTag
  • org.obolibrary.oboformat.parser.OBOFormatParser
  • org.obolibrary.oboformat.writer.OBOFormatWriter$OWLOntologyNameProvider
  • org.semanticweb.owlapi.formats.RDFXMLDocumentFormat
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