Package org.mitre.medfacts.zoner

Examples of org.mitre.medfacts.zoner.CharacterOffsetToLineTokenConverter

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    SingleDocumentProcessorCtakes p = new SingleDocumentProcessorCtakes();
    p.setJcas(jcas);
    p.setAssertionDecoderConfiguration(assertionDecoderConfiguration);
    // p.setContents(tokenizedContents);
    p.setContents(contents);
    CharacterOffsetToLineTokenConverter converter = new CharacterOffsetToLineTokenConverterCtakesImpl(
        jcas);
    p.setConverter2(converter);
    for (ApiConcept apiConcept : apiConceptList)
    {
      //logger
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    SingleDocumentProcessorCtakes p = new SingleDocumentProcessorCtakes();
    p.setJcas(jcas);
    p.setAssertionDecoderConfiguration(assertionDecoderConfiguration);
    // p.setContents(tokenizedContents);
    p.setContents(contents);
    CharacterOffsetToLineTokenConverter converter = new CharacterOffsetToLineTokenConverterCtakesImpl(
        jcas);
    p.setConverter2(converter);
    for (ApiConcept apiConcept : apiConceptList)
    {
      //logger
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        textLookup = textLookupTemp.toArray(twoDimensionalStringArray);
        wholeText = builder.toString();
    }

    public void addConceptAnnotation(int startCharOffset, int endCharOffset, String typ, ConceptTypeParam conceptType) {
      CharacterOffsetToLineTokenConverter converter = new CharacterOffsetToLineTokenConverterDefaultImpl(wholeText);

      LineAndTokenPosition startLineAndTokenPosition = converter.convert(startCharOffset);
      LineAndTokenPosition endLineAndTokenPosition = converter.convert(endCharOffset);

      ConceptAnnotation conceptAnnotation = new ConceptAnnotation();

      Location beginLocation = new Location();
      beginLocation.setLine(startLineAndTokenPosition.getLine());
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    SingleDocumentProcessorCtakes p = new SingleDocumentProcessorCtakes();
    p.setJcas(jcas);
    p.setAssertionDecoderConfiguration(assertionDecoderConfiguration);
    // p.setContents(tokenizedContents);
    p.setContents(contents);
    CharacterOffsetToLineTokenConverter converter = new CharacterOffsetToLineTokenConverterCtakesImpl(
        jcas);
    p.setConverter2(converter);
    for (ApiConcept apiConcept : apiConceptList)
    {
      //logger
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Related Classes of org.mitre.medfacts.zoner.CharacterOffsetToLineTokenConverter

  • org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine
  • org.mitre.medfacts.i2b2.cli.AssertionDocumentObject
  • org.mitre.medfacts.uima.assertion.AssertionAnalysisEngine
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