Package org.broadinstitute.gatk.utils.recalibration.covariates

Examples of org.broadinstitute.gatk.utils.recalibration.covariates.ReadGroupCovariate

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    RecalibrationArgumentCollection RAC;

    @BeforeClass
    public void init() {
        RAC = new RecalibrationArgumentCollection();
        covariate = new ReadGroupCovariate();
        covariate.initialize(RAC);
    }
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    @Test(enabled = true)
    public void testForceReadgroup() {
        final RecalibrationArgumentCollection forcedRAC = new RecalibrationArgumentCollection();
        forcedRAC.FORCE_READGROUP = "FOO";
        final ReadGroupCovariate forcedCovariate = new ReadGroupCovariate();
        forcedCovariate.initialize(forcedRAC);

        final GATKSAMReadGroupRecord rg = new GATKSAMReadGroupRecord("NOT_FOO");
        runTest(rg, "FOO", forcedCovariate);
    }
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Related Classes of org.broadinstitute.gatk.utils.recalibration.covariates.ReadGroupCovariate

  • org.broadinstitute.gatk.utils.recalibration.ReadGroupCovariateUnitTest
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