Package org.broadinstitute.gatk.engine.io.stubs

Examples of org.broadinstitute.gatk.engine.io.stubs.Stub


        if( threadLocalOutputStreams == null || threadLocalOutputStreams.isEmpty() )
            return null;

        final OutputMergeTask outputMergeTask = new OutputMergeTask();
        for( Map.Entry<Stub,Storage> entry: threadLocalOutputStreams.entrySet() ) {
            final Stub stub = entry.getKey();
            final Storage storageEntry = entry.getValue();

            storageEntry.close();
            outputMergeTask.addMergeOperation(getTargetStream(stub), storageEntry);
        }
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