Package org.broad.igv.track

Examples of org.broad.igv.track.DataSourceTrack

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        SegmentedDataSet dsB = getSegDataSet(pathB);

        SegmentedDataSource sourceA = new SegmentedDataSource("0123-A", dsA);
        SegmentedDataSource sourceB = new SegmentedDataSource("0123-B-1", dsB);

        DataSourceTrack trackA = new DataSourceTrack(null, sourceA.getTrackIdentifier(), sourceA.getTrackIdentifier(), sourceA);
        DataSourceTrack trackB = new DataSourceTrack(null, sourceB.getTrackIdentifier(), sourceB.getTrackIdentifier(), sourceB);

        return new CombinedDataSource(trackA, trackB, operation);
    }
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        @Override
        public DataTrack unmarshal(String trackId) throws Exception {
            DataTrack dataTrack = (DataTrack) IGVSessionReader.getMatchingTrack(trackId, null);
            if(dataTrack == null){
                dataTrack = new DataSourceTrack(null, trackId, null, null);
            }
            return dataTrack;
        }
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                    newTrack = new FeatureTrack(UUID.randomUUID().toString(), name, featSource);
                    break;
                case DATA_SOURCE_TRACK:
                    PluginDataSource dataSource = new PluginDataSource(GenomeManager.getInstance().getCurrentGenome(), cmdList, argumentValues, outputAttr, specPath);
                    //dataSource.setQueryTracker(queryTracker);
                    newTrack = new DataSourceTrack(null, UUID.randomUUID().toString(), name, dataSource);
                    break;
                case VARIANT_TRACK:
                    PluginFeatureSource VfeatSource1 = new PluginFeatureSource(cmdList, argumentValues, outputAttr, specPath, this.forbidEmptyOutput);
                    FeatureSource VfeatSource = new CachingFeatureSource(VfeatSource1);
                    newTrack = new VariantTrack(name, VfeatSource);
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Related Classes of org.broad.igv.track.DataSourceTrack

  • org.broad.igv.cli_plugin.ui.RunPlugin
  • org.broad.igv.data.CombinedDataSourceTest
  • org.broad.igv.data.DataSource
  • org.broad.igv.renderer.DataRange
  • org.broad.igv.session.SessionXmlAdapters$DataTrackIDAdapter
  • javax.xml.namespace.QName
  • javax.xml.bind.JAXBElement
  • org.w3c.dom.Node
  • org.w3c.dom.NodeList
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