Package org.broad.igv.synteny

Examples of org.broad.igv.synteny.BlastParser


    }


    private void loadSyntentyMapping(ResourceLocator locator, List<Track> newTracks) {

        List<BlastMapping> mappings = (new BlastParser()).parse(locator.getPath());
        List<htsjdk.tribble.Feature> features = new ArrayList<htsjdk.tribble.Feature>(mappings.size());
        features.addAll(mappings);

        Genome genome = GenomeManager.getInstance().getCurrentGenome();
        FeatureTrack track = new FeatureTrack(locator, new FeatureCollectionSource(features, genome));
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