Package org.broad.igv.data

Examples of org.broad.igv.data.CoverageDataSource

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                        TDFReader reader = TDFReader.getReader(file.getAbsolutePath());
                        TDFDataSource ds = new TDFDataSource(reader, 0, getName() + " coverage", genome);
                        setDataSource(ds);
                        IGV.getInstance().repaintDataPanels();
                    } else if (path.endsWith(".counts")) {
                        CoverageDataSource ds = new GobyCountArchiveDataSource(file);
                        setDataSource(ds);
                        IGV.getInstance().repaintDataPanels();
                    } else {
                        MessageUtils.showMessage("Coverage data must be in .tdf format");
                    }
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                                    TDFReader reader = TDFReader.getReader(file.getAbsolutePath());
                                    TDFDataSource ds = new TDFDataSource(reader, 0, getName() + " coverage", genome);
                                    getCoverageTrack().setDataSource(ds);
                                    refresh();
                                } else if (path.endsWith(".counts")) {
                                    CoverageDataSource ds = new GobyCountArchiveDataSource(file);
                                    getCoverageTrack().setDataSource(ds);
                                    refresh();
                                } else {
                                    MessageUtils.showMessage("Coverage data must be in .tdf format");
                                }
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Related Classes of org.broad.igv.data.CoverageDataSource

  • org.broad.igv.sam.AlignmentTrack$PopupMenu
  • org.broad.igv.sam.CoverageTrack
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