Package org.broad.igv.das

Examples of org.broad.igv.das.DASFeatureSource$DasReader


        //TODO Connect and get all the attributes of the DAS server, and run the appropriate load statements
        //TODO Currently we are only going to be doing features
        // TODO -- move the source creation to a factory


        DASFeatureSource featureSource = null;
        try {
            featureSource = new DASFeatureSource(locator);
        } catch (MalformedURLException e) {
            log.error("Malformed URL", e);
            throw new DataLoadException("Error: Malformed URL ");
        }

        FeatureTrack track = new FeatureTrack(locator, featureSource);

        // Try to create a sensible name from the path
        String name = locator.getName();
        if (name == null || name.length() == 0) {
            if (locator.getPath().contains("genome.ucsc.edu")) {
                name = featureSource.getType();
            } else {
                name = featureSource.getPath().replace("/das/", "").replace("/features", "");
            }
        }
        track.setName(name);

        // A hack until we can notate this some other way
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