Examples of org.broad.igv.bbfile.BedFeature

            return bedIterator.hasNext();  //To change body of implemented methods use File | Settings | File Templates.
        }


        public MethylScore next() {


            BedFeature feat = null;


            while (feat == null && bedIterator.hasNext()) {
                feat = bedIterator.next();
                String[] restOfFields = feat.getRestOfFields();
                MethylScore score = type == Type.ZILLER ?
                        createZillerScore(feat, restOfFields) : createUSCScore(feat, restOfFields);
                return score;
            }
            return null;


        String chrAlias = chrNameMap.containsKey(chr) ? chrNameMap.get(chr) : chr;
        Iterator<BedFeature> bedIterator = reader.getBigBedIterator(chrAlias, start, chrAlias, end, false);


        while (bedIterator.hasNext()) {
            BedFeature feat = bedIterator.next();


            startsList.add(feat.getStartBase());
            endsList.add(feat.getEndBase());
            //valuesList.add(wi.getWigValue());
        }


        DataTile tile = new DataTile(startsList.toArray(), endsList.toArray(), valuesList.toArray(), null);
        currentInterval = new RawDataInterval(chr, start, end, tile);

Related Classes of org.broad.igv.bbfile.BedFeature

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