Package org.bioinfo.ngs.qc.qualimap.gui.dialogs

Examples of org.bioinfo.ngs.qc.qualimap.gui.dialogs.BrowseButtonActionListener


        infoFileEdit = new JTextField(30);
        infoFileEdit.setToolTipText(INFO_FILE_TOOLTIP);
        add(infoFileEdit, "grow");

        browseInfoFileButton = new JButton("...");
        browseInfoFileButton.addActionListener( new BrowseButtonActionListener(homeFrame,
                        infoFileEdit, "Species files", "txt"));

        add(browseInfoFileButton, "align center, wrap 30px");

        ButtonGroup group = new ButtonGroup();
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        browseGeneSelectionButton = new JButton();
    browseGeneSelectionButton.setText("...");
        String[] supportedExtentions =  { "bed", "gff"};
    browseGeneSelectionButton.addActionListener(
                new BrowseButtonActionListener(this, regionsField,"Annotation files", supportedExtentions ));
        add(browseGeneSelectionButton, "align center, wrap");

        add(new JLabel("Location"), "span 2, wrap");

        locationPanel = new JPanel();
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        bamPathEdit = new JTextField(40);
        bamPathEdit.setToolTipText("Path to BAM alignment file");
        add(bamPathEdit, "grow");

        browseBamButton = new JButton("...");
    browseBamButton.addActionListener( new BrowseButtonActionListener(this,
                bamPathEdit, "BAM files", "bam"));
        add(browseBamButton, "align center, wrap");

        add(new JLabel("Annotation file:"), "");

        gffPathEdit = new JTextField(40);
        gffPathEdit.setToolTipText("File with the definition of the regions for the features in Ensembl GTF format).");
        add(gffPathEdit, "grow");

        browseGffButton = new JButton();
    browseGffButton.setText("...");
    browseGffButton.addActionListener(new BrowseGffButtonListener(this, gffPathEdit));
        browseBamButton.addActionListener(this);
        add(browseGffButton, "align center, wrap");


        add(new JLabel("Protocol:"));
        String[] protocolComboItems = LibraryProtocol.getProtocolNames();
        strandTypeCombo = new JComboBox<String>(protocolComboItems);
        strandTypeCombo.setToolTipText("Select the corresponding sequencing protocol");
        strandTypeCombo.addActionListener(this);
        add(strandTypeCombo, "wrap");

        outputCountsBox = new JCheckBox("Output gene counts");
        outputCountsBox.addActionListener(this);
        add(outputCountsBox, "wrap");


        countsPathLabel = new JLabel("Path:");
        add( countsPathLabel );

        countsPathEdit = new JTextField(40);
        countsPathEdit.setToolTipText("Path to the file which will contain output gene counts");
        add(countsPathEdit, "grow");
        browseCountsFileButton = new JButton("...");
        browseCountsFileButton.addActionListener(new BrowseButtonActionListener(this,
                countsPathEdit, "Counts file", false));
        add(browseCountsFileButton, "align center, wrap");

        advancedOptions = new JCheckBox("Advanced options:");
        advancedOptions.addActionListener(this);
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