Examples of org.apache.commons.math.stat.descriptive.moment.Mean

Package org.apache.commons.math.stat.descriptive.moment

Examples of org.apache.commons.math.stat.descriptive.moment.Mean

org.apache.commons.math.stat.descriptive.moment.Mean
Computes the arithmetic mean of a set of values. Uses the definitional formula:

mean = sum(x_i) / n

where n is the number of observations.

When {@link #increment(double)} is used to add data incrementally from astream of (unstored) values, the value of the statistic that {@link #getResult()} returns is computed using the following recursiveupdating algorithm:
1. Initialize m = the first value
2. For each additional value, update using
  m = m + (new value - m) / (number of observations)
If {@link #evaluate(double[])} is used to compute the mean of an arrayof stored values, a two-pass, corrected algorithm is used, starting with the definitional formula computed using the array of stored values and then correcting this by adding the mean deviation of the data values from the arithmetic mean. See, e.g. "Comparison of Several Algorithms for Computing Sample Means and Variances," Robert F. Ling, Journal of the American Statistical Association, Vol. 69, No. 348 (Dec., 1974), pp. 859-866.

Returns Double.NaN if the dataset is empty.
Note that this implementation is not synchronized. If multiple threads access an instance of this class concurrently, and at least one of the threads invokes the increment() or clear() method, it must be synchronized externally. @version $Revision: 1006299 $ $Date: 2010-10-10 16:47:17 +0200 (dim. 10 oct. 2010) $


  public Stat() {
    min = new Min();
    max = new Max();
    sum = new Sum();
    mean = new Mean();
    sd = new StandardDeviation();


    stats = new StorelessUnivariateStatistic[] {min, max, sum, mean, sd};
  }

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        u.clear();
        u.addValue(1);
        u.addValue(2);
        assertEquals(3, u.getMean(), 1E-14);
        u.clear();
        u.setMeanImpl(new Mean()); // OK after clear
    }

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    public void testInteraction() {


        FourthMoment m4 = new FourthMoment();
        Mean m = new Mean(m4);
        Variance v = new Variance(m4);
        Skewness s= new Skewness(m4);
        Kurtosis k = new Kurtosis(m4);


        for (int i = 0; i < testArray.length; i++){
            m4.increment(testArray[i]);
        }


        assertEquals(mean,m.getResult(),tolerance);
        assertEquals(var,v.getResult(),tolerance);
        assertEquals(skew ,s.getResult(),tolerance);
        assertEquals(kurt,k.getResult(),tolerance);


    }

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        u.addValue(new double[] { 3, 4 });
        assertEquals(4, u.getMean()[0], 1E-14);
        assertEquals(6, u.getMean()[1], 1E-14);
        u.clear();
        u.setMeanImpl(new StorelessUnivariateStatistic[] {
                        new Mean(), new Mean()
                      }); // OK after clear
        u.addValue(new double[] { 1, 2 });
        u.addValue(new double[] { 3, 4 });
        assertEquals(2, u.getMean()[0], 1E-14);
        assertEquals(3, u.getMean()[1], 1E-14);

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            sumSqImpl[i]   = new SumOfSquares();
            minImpl[i]     = new Min();
            maxImpl[i]     = new Max();
            sumLogImpl[i]  = new SumOfLogs();
            geoMeanImpl[i] = new GeometricMean();
            meanImpl[i]    = new Mean();
        }


        covarianceImpl =
            new VectorialCovariance(k, isCovarianceBiasCorrected);

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     * </p>
     * @return the mean
     */
    public double getMean() {
        if (mean == meanImpl) {
            return new Mean(secondMoment).getResult();
        } else {
            return meanImpl.getResult();
        }
    }

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     * @throws  IllegalArgumentException if the arrays lengths do not match or
     * there is insufficient data
     */
    public double covariance(final double[] xArray, final double[] yArray, boolean biasCorrected)
        throws IllegalArgumentException {
        Mean mean = new Mean();
        double result = 0d;
        int length = xArray.length;
        if (length != yArray.length) {
            throw MathRuntimeException.createIllegalArgumentException(
                  LocalizedFormats.DIMENSIONS_MISMATCH_SIMPLE, length, yArray.length);
        } else if (length < 2) {
            throw MathRuntimeException.createIllegalArgumentException(
                  LocalizedFormats.INSUFFICIENT_DIMENSION, length, 2);
        } else {
            double xMean = mean.evaluate(xArray);
            double yMean = mean.evaluate(yArray);
            for (int i = 0; i < length; i++) {
                double xDev = xArray[i] - xMean;
                double yDev = yArray[i] - yMean;
                result += (xDev * yDev - result) / (i + 1);
            }

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    //System.out.println(ut.getColumnDimension() + "\t" + ut.getRowDimension());
    //System.out.println(vt.getColumnDimension() + "\t" + vt.getRowDimension());
    //System.out.println(wordNo);
    //System.out.println(featureList.size());
    
    UnivariateStatistic mean = new Mean();
    UnivariateStatistic stdev = new StandardDeviation();
    List<Double> cmeans = new ArrayList<Double>();
    List<Double> cstdevs = new ArrayList<Double>();
    List<Double> ncmeans = new ArrayList<Double>();
    List<Double> ncstdevs = new ArrayList<Double>();
    int ccount = 0;
    int nccount = 0;
    for(int i=0;i<values;i++) {
      Map<String,Double> results = new HashMap<String,Double>();
      for(int j=0;j<wordNo;j++) {
        results.put(terms.get(j), ut.get(i,j));
      }
      List<String> resultsList = StringTools.getSortedList(results);
      for(String s : resultsList.subList(0, 20)) {
        System.out.println(s + "\t" + results.get(s));
      }
      System.out.println("...");
      for(String s : resultsList.subList(resultsList.size()-20, resultsList.size())) {
        System.out.println(s + "\t" + results.get(s));
      }
      List<Double> chemScores = new ArrayList<Double>();
      List<Double> nonChemScores = new ArrayList<Double>();
      List<Double> allScores = new ArrayList<Double>();
      for(int j=500;j<1000;j++) {
        boolean isChem = chemSet.contains(terms.get(j));
        //System.out.println(isChem);
        List<Double> list = isChem ? chemScores : nonChemScores;
        list.add(ut.get(i,j));
        allScores.add(ut.get(i,j));
      }
      System.out.println(chemScores.size() + "\t" + nonChemScores.size());
      double [] cs = new double[chemScores.size()];
      for(int j=0;j<chemScores.size();j++) cs[j] = chemScores.get(j);
      double [] ncs = new double[nonChemScores.size()];
      for(int j=0;j<nonChemScores.size();j++) ncs[j] = nonChemScores.get(j);
      double [] as = new double[allScores.size()];
      for(int j=0;j<allScores.size();j++) as[j] = allScores.get(j);
      System.out.println(mean.evaluate(cs) + "\t" + stdev.evaluate(cs));
      System.out.println(mean.evaluate(ncs) + "\t" + stdev.evaluate(ncs));
      cmeans.add(mean.evaluate(cs));
      cstdevs.add(stdev.evaluate(cs));
      ncmeans.add(mean.evaluate(ncs));
      ncstdevs.add(stdev.evaluate(ncs));
      System.out.println();
      ccount = cs.length;
      nccount = ncs.length;
    }

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        resultWriter
                .append("#requestedQueryRate \tachievedQueryRate \tfiredQueries \tqueryErrors \tavarageQueryDuration \tstandardDeviation  \n");
      }
      try {
        StorelessUnivariateStatistic timeStandardDeviation = new StandardDeviation();
        StorelessUnivariateStatistic timeMean = new Mean();
        int errors = 0;


        for (LoadTestQueryResult result : queryResults) {
          long elapsedTime = result.getEndTime() > 0 ? result.getEndTime() - result.getStartTime() : -1;
          statisticsWriter.write(queryRate + "\t" + result.getNodeId() + "\t" + result.getStartTime() + "\t"
                  + result.getEndTime() + "\t" + elapsedTime + "\t" + result.getQuery() + "\n");
          if (elapsedTime != -1) {
            timeStandardDeviation.increment(elapsedTime);
            timeMean.increment(elapsedTime);
          } else {
            ++errors;
          }
        }
        resultWriter.write(queryRate + "\t" + ((double) queryResults.size() / (_runTime / 1000)) + "\t"
                + queryResults.size() + "\t" + errors + "\t" + (int) timeMean.getResult() + "\t"
                + (int) timeStandardDeviation.getResult() + "\n");
      } catch (IOException e) {
        throw new IllegalStateException("Failed to write statistics data.", e);
      }
      try {

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    public void testInteraction() {
        
        FourthMoment m4 = new FourthMoment();
        Mean m = new Mean(m4);
        Variance v = new Variance(m4);
        Skewness s= new Skewness(m4);
        Kurtosis k = new Kurtosis(m4);


        for (int i = 0; i < testArray.length; i++){
            m4.increment(testArray[i]);
        }
        
        assertEquals(mean,m.getResult(),tolerance);
        assertEquals(var,v.getResult(),tolerance);
        assertEquals(skew ,s.getResult(),tolerance);
        assertEquals(kurt,k.getResult(),tolerance);


    }

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