Examples of org.apache.airavata.model.appcatalog.appinterface.OutputDataObjectType

Package org.apache.airavata.model.appcatalog.appinterface

Examples of org.apache.airavata.model.appcatalog.appinterface.OutputDataObjectType

org.apache.airavata.model.appcatalog.appinterface.OutputDataObjectType
Application Outputs. The paramters describe how outputs generated by the application. name: Name of the parameter. value: Value of the parameter. type: Data type of the parameter applicationArguement: The argument flag sent to the application. Such as -p pressure. standardInput: When this value is set, the parameter is sent as standard input rather than a parameter. Typically this is passed using redirection operator ">". userFriendlyDescription: Description to be displayed at the user interface. metaData: Any metadat. This is typically ignore by Airavata and is used by gateways for application configuration.

            InputDataObjectType appInput1 = createAppInput("input1", "input1", DataType.STRING);
            InputDataObjectType appInput2 = createAppInput("input2", "input2", DataType.INTEGER);
            List<InputDataObjectType> inputs = new ArrayList<InputDataObjectType>();
            inputs.add(appInput1);
            inputs.add(appInput2);
            OutputDataObjectType output1 = createAppOutput("output1", "", DataType.STRING);
            OutputDataObjectType output2 = createAppOutput("output2", "", DataType.STRING);
            List<OutputDataObjectType> outputs = new ArrayList<OutputDataObjectType>();
            outputs.add(output1);
            outputs.add(output2);
            description.setApplicationName("testApplication");
            description.setApplicationDesription("my testApplication");

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        input.setApplicationArgument("test arg");
        return input;
    }


    public OutputDataObjectType createAppOutput (String inputName, String value, DataType type ){
        OutputDataObjectType outputDataObjectType = new OutputDataObjectType();
        outputDataObjectType.setName(inputName);
        outputDataObjectType.setValue(value);
        outputDataObjectType.setType(type);
        return outputDataObjectType;
    }

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            outputs.add(getOutputDataObjType((ApplicationOutputResource) resource));
        }
        return outputs;
    }
    public static OutputDataObjectType getOutputDataObjType (ApplicationOutputResource output){
        OutputDataObjectType outputDataObjectType = new OutputDataObjectType();
        outputDataObjectType.setName(output.getOutputKey());
        outputDataObjectType.setValue(output.getOutputVal());
        outputDataObjectType.setType(DataType.valueOf(output.getDataType()));
        return outputDataObjectType;
    }

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        if (metadata != null) input.setMetaData(metadata);
        return input;
    }


    public static OutputDataObjectType createAppOutput(String inputName, String value, DataType type) {
        OutputDataObjectType outputDataObjectType = new OutputDataObjectType();
//        outputDataObjectType.setIsEmpty(false);
        if (inputName != null) outputDataObjectType.setName(inputName);
        if (value != null) outputDataObjectType.setValue(value);
        if (type != null) outputDataObjectType.setType(type);
        return outputDataObjectType;
    }

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                    DataType.STRING, null, false, "A test string to Echo", null);


            List<InputDataObjectType> applicationInputs = new ArrayList<InputDataObjectType>();
            applicationInputs.add(input1);


            OutputDataObjectType output1 = RegisterSampleApplicationsUtils.createAppOutput("Echoed_Output",
                    "", DataType.STRING);


            List<OutputDataObjectType> applicationOutputs = new ArrayList<OutputDataObjectType>();
            applicationOutputs.add(output1);

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            List<InputDataObjectType> applicationInputs = new ArrayList<InputDataObjectType>();
            applicationInputs.add(input1);
            applicationInputs.add(input2);
            applicationInputs.add(input3);


            OutputDataObjectType output1 = RegisterSampleApplicationsUtils.createAppOutput("AMBER_Execution_Summary",null,DataType.URI);
            OutputDataObjectType output2 = RegisterSampleApplicationsUtils.createAppOutput("AMBER_Execution_log",null,DataType.URI);
            OutputDataObjectType output3 = RegisterSampleApplicationsUtils.createAppOutput("AMBER_Trajectory_file",null,DataType.URI);
            OutputDataObjectType output4 = RegisterSampleApplicationsUtils.createAppOutput("AMBER_Restart_file",null,DataType.URI);


            List<OutputDataObjectType> applicationOutputs = new ArrayList<OutputDataObjectType>();
            applicationOutputs.add(output1);
            applicationOutputs.add(output2);
            applicationOutputs.add(output3);

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            List<InputDataObjectType> applicationInputs = new ArrayList<InputDataObjectType>();
            applicationInputs.add(input1);
            applicationInputs.add(input2);
            applicationInputs.add(input3);


            OutputDataObjectType output1 = RegisterSampleApplicationsUtils.createAppOutput("Echoed_Output",
                    "", DataType.STRING);


            List<OutputDataObjectType> applicationOutputs = new ArrayList<OutputDataObjectType>();
            applicationOutputs.add(output1);

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            List<InputDataObjectType> applicationInputs = new ArrayList<InputDataObjectType>();
            applicationInputs.add(input1);
            applicationInputs.add(input2);


            OutputDataObjectType output1 = RegisterSampleApplicationsUtils.createAppOutput("ESPRESSO_Execution_Log",null,DataType.URI);
            OutputDataObjectType output2 = RegisterSampleApplicationsUtils.createAppOutput("ESPRESSO_WFC_Binary_file",null,DataType.URI);


            List<OutputDataObjectType> applicationOutputs = new ArrayList<OutputDataObjectType>();
            applicationOutputs.add(output1);
            applicationOutputs.add(output2);

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            List<InputDataObjectType> applicationInputs = new ArrayList<InputDataObjectType>();
            applicationInputs.add(input1);
            applicationInputs.add(input2);


            OutputDataObjectType output1 = RegisterSampleApplicationsUtils.createAppOutput("GROMACS_Execution_Log",null,DataType.URI);
            OutputDataObjectType output2 = RegisterSampleApplicationsUtils.createAppOutput("Full_Precision_Trajectory_file",null,DataType.URI);
            OutputDataObjectType output3 = RegisterSampleApplicationsUtils.createAppOutput("Portable_Energy_file",null,DataType.URI);


            List<OutputDataObjectType> applicationOutputs = new ArrayList<OutputDataObjectType>();
            applicationOutputs.add(output1);
            applicationOutputs.add(output2);
            applicationOutputs.add(output3);

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                    DataType.URI, null, false, "Friction Simulation Input - in.friction", null);


            List<InputDataObjectType> applicationInputs = new ArrayList<InputDataObjectType>();
            applicationInputs.add(input1);


            OutputDataObjectType output1 = RegisterSampleApplicationsUtils.createAppOutput("LAMMPS_Simulation_Log",null,DataType.URI);


            List<OutputDataObjectType> applicationOutputs = new ArrayList<OutputDataObjectType>();
            applicationOutputs.add(output1);


            lammpsInterfaceId = airavataClient.registerApplicationInterface(

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