Examples of org.apache.airavata.model.appcatalog.appdeployment.ApplicationModule

Package org.apache.airavata.model.appcatalog.appdeployment

Examples of org.apache.airavata.model.appcatalog.appdeployment.ApplicationModule

org.apache.airavata.model.appcatalog.appdeployment.ApplicationModule
Application Module Information. A module has to be registered before registering a deployment. appModuleId: Airavata Internal Unique Job ID. This is set by the registry. appModuleName: Name of the application module. appModuleVersion: Version of the application. appModuleDescription: Descriprion of the Module


        LOCALDataMovement localDataMovement = new LOCALDataMovement();
        client.addLocalDataMovementDetails(host.getComputeResourceId(), 1, localDataMovement);


        //Define application module
        ApplicationModule module = DocumentCreatorUtils.createApplicationModule("echo", "1.0.0", "Local host echo applications");
        module.setAppModuleId(client.registerApplicationModule(module));


        //Define application interfaces
        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
//      application.setIsEmpty(false);
        application.setApplicationName("SimpleEcho0");
        application.addToApplicationModules(module.getAppModuleId());
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("echo_input", "echo_input", "Echo Input Data", null, DataType.STRING));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("echo_output", null, DataType.STRING));
        application.setApplicationInterfaceId(client.registerApplicationInterface(application));


        //Define application deployment
        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module.getAppModuleId(), "/bin/echo", ApplicationParallelismType.SERIAL, "Local echo app depoyment");
        deployment.setAppDeploymentId(client.registerApplicationDeployment(deployment));


        //Define gateway profile
        ComputeResourcePreference computeResourcePreference = DocumentCreatorUtils.createComputeResourcePreference(
                host.getComputeResourceId(), "/tmp", null,

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        SCPDataMovement scpDataMovement = new SCPDataMovement();
        scpDataMovement.setSecurityProtocol(SecurityProtocol.SSH_KEYS);
        scpDataMovement.setSshPort(22);
        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);


        ApplicationModule module = DocumentCreatorUtils.createApplicationModule("echo", "1.1", null);
        module.setAppModuleId(client.registerApplicationModule(module));
        ;


        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module.getAppModuleId(), "/bin/echo", ApplicationParallelismType.SERIAL, "SSHEchoApplication");
        client.registerApplicationDeployment(deployment);


        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
//      application.setIsEmpty(false);
        application.setApplicationName("SSHEcho1");
        application.addToApplicationModules(module.getAppModuleId());
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("echo_input", "echo_input", null, null, DataType.STRING));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("echo_output", null, DataType.STRING));
        client.registerApplicationInterface(application);
        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/tmp", null, false, null, null, null));
        return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();

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        scpDataMovement.setSecurityProtocol(SecurityProtocol.GSI);
        scpDataMovement.setSshPort(22);


        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);


        ApplicationModule module1 = DocumentCreatorUtils.createApplicationModule("echo", "1.2", null);
        module1.setAppModuleId(client.registerApplicationModule(module1));


        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
//      application.setIsEmpty(false);
        application.setApplicationName("SimpleEcho2");
        application.addToApplicationModules(module1.getAppModuleId());
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("echo_input", "echo_input", "echo_input", null, DataType.STRING));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("echo_output", null, DataType.STRING));


        application.setApplicationInterfaceId(client.registerApplicationInterface(application));


        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module1.getAppModuleId(), "/bin/echo", ApplicationParallelismType.SERIAL, "Echo application");
        deployment.setAppDeploymentId(client.registerApplicationDeployment(deployment));


        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/oasis/scratch/trestles/ogce/temp_project/", "sds128", false, null, null, null));
        return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();
    }

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        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);


        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/oasis/scratch/trestles/ogce/temp_project/", "sds128", false, null, null, null));


        ApplicationModule module2 = DocumentCreatorUtils.createApplicationModule("wrf", "1.0.0", null);
        module2.setAppModuleId(client.registerApplicationModule(module2));
        ApplicationInterfaceDescription application2 = new ApplicationInterfaceDescription();
//      application2.setIsEmpty(false);
        application2.setApplicationName("WRF");
        application2.addToApplicationModules(module2.getAppModuleId());
        application2.addToApplicationInputs(DocumentCreatorUtils.createAppInput("WRF_Namelist", "WRF_Namelist", null, null, DataType.URI));
        application2.addToApplicationInputs(DocumentCreatorUtils.createAppInput("WRF_Boundary_File", "WRF_Boundary_File", null, null, DataType.URI));
        application2.addToApplicationInputs(DocumentCreatorUtils.createAppInput("WRF_Input_File", "WRF_Input_File", null, null, DataType.URI));


        application2.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("WRF_Output", null, DataType.URI));
        application2.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("WRF_Execution_Log", null, DataType.URI));
        application2.setApplicationInterfaceId(client.registerApplicationInterface(application2));


        ApplicationDeploymentDescription deployment2 = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module2.getAppModuleId(), "/home/ogce/production/app_wrappers/wrf_wrapper.sh", ApplicationParallelismType.MPI, "WRF");
        deployment2.setAppDeploymentId(client.registerApplicationDeployment(deployment2));
        return host.getComputeResourceId() + "," + application2.getApplicationInterfaceId();
    }

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        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);
        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);


        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/home1/01437/ogce", "TG-STA110014S", false, null, null, null));


        ApplicationModule module2 = DocumentCreatorUtils.createApplicationModule("wrf", "1.0.0", null);
        module2.setAppModuleId(client.registerApplicationModule(module2));
        ApplicationInterfaceDescription application2 = new ApplicationInterfaceDescription();
        //      application2.setIsEmpty(false);
        application2.setApplicationName("WRF");
        application2.addToApplicationModules(module2.getAppModuleId());
        application2.addToApplicationInputs(DocumentCreatorUtils.createAppInput("WRF_Namelist", "WRF_Namelist", null, null, DataType.URI));
        application2.addToApplicationInputs(DocumentCreatorUtils.createAppInput("WRF_Boundary_File", "WRF_Boundary_File", null, null, DataType.URI));
        application2.addToApplicationInputs(DocumentCreatorUtils.createAppInput("WRF_Input_File", "WRF_Input_File", null, null, DataType.URI));


        application2.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("WRF_Output", null, DataType.URI));
        application2.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("WRF_Execution_Log", null, DataType.URI));
        application2.setApplicationInterfaceId(client.registerApplicationInterface(application2));


        ApplicationDeploymentDescription deployment2 = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module2.getAppModuleId(), "/home1/01437/ogce/production/app_wrappers/wrf_wrapper.sh", ApplicationParallelismType.MPI, "WRF");
        deployment2.setAppDeploymentId(client.registerApplicationDeployment(deployment2));
        return host.getComputeResourceId() + "," + application2.getApplicationInterfaceId();


    }

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        SCPDataMovement scpDataMovement = new SCPDataMovement();
        scpDataMovement.setSecurityProtocol(SecurityProtocol.GSI);
        scpDataMovement.setSshPort(22);
        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);


        ApplicationModule module = DocumentCreatorUtils.createApplicationModule("echo", "1.3", null);
        module.setAppModuleId(client.registerApplicationModule(module));


        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
//      application.setIsEmpty(false);
        application.setApplicationName("SimpleEcho3");
        application.addToApplicationModules(module.getAppModuleId());
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("echo_input", "echo_input", null, null, DataType.STRING));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("echo_output", null, DataType.STRING));
        application.setApplicationInterfaceId(client.registerApplicationInterface(application));


        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module.getAppModuleId(), "/bin/echo", ApplicationParallelismType.SERIAL, "EchoLocal");
        deployment.setAppDeploymentId(client.registerApplicationDeployment(deployment));


        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/home1/01437/ogce", "TG-STA110014S", false, null, null, null));
        return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();
    }

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        SCPDataMovement scpDataMovement = new SCPDataMovement();
        scpDataMovement.setSecurityProtocol(SecurityProtocol.GSI);
        scpDataMovement.setSshPort(22);
        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);


        ApplicationModule module = DocumentCreatorUtils.createApplicationModule("echo", "1.4", null);
        module.setAppModuleId(client.registerApplicationModule(module));


        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
//      application.setIsEmpty(false);
        application.setApplicationName("SimpleEcho4");
        application.addToApplicationModules(module.getAppModuleId());
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("echo_input", "echo_input", null, null, DataType.STRING));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("echo_output", null, DataType.STRING));
        application.setApplicationInterfaceId(client.registerApplicationInterface(application));


        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module.getAppModuleId(), "/bin/echo", ApplicationParallelismType.SERIAL, "EchoLocal");
        deployment.setAppDeploymentId(client.registerApplicationDeployment(deployment));


        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/home1/01437/ogce", "TG-STA110014S", false, null, null, null));
        return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();
    }

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        SCPDataMovement scpDataMovement = new SCPDataMovement();
        scpDataMovement.setSecurityProtocol(SecurityProtocol.SSH_KEYS);
        scpDataMovement.setSshPort(22);
        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);


        ApplicationModule module = DocumentCreatorUtils.createApplicationModule("echo", "1.5", null);
        module.setAppModuleId(client.registerApplicationModule(module));


        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
        application.setApplicationName("SimpleEchoBR");
        application.addToApplicationModules(module.getAppModuleId());
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("echo_input", "echo_input", null, null, DataType.STRING));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("echo_output", null, DataType.STRING));
        application.setApplicationInterfaceId(client.registerApplicationInterface(application));


        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module.getAppModuleId(), "/N/u/lginnali/BigRed2/myjob/test.sh", ApplicationParallelismType.SERIAL, "EchoLocal");
        deployment.setAppDeploymentId(client.registerApplicationDeployment(deployment));


        String date = (new Date()).toString();
        date = date.replaceAll(" ", "_");
        date = date.replaceAll(":", "_");

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        scpDataMovement.setSecurityProtocol(SecurityProtocol.SSH_KEYS);
        scpDataMovement.setSshPort(22);
        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);




        ApplicationModule amodule = DocumentCreatorUtils.createApplicationModule("Amber", "12.0", null);
        amodule.setAppModuleId(client.registerApplicationModule(amodule));




        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
        application.setApplicationName("AmberBR2");
        application.addToApplicationModules(amodule.getAppModuleId());
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_HEAT_RST", "AMBER_HEAT_RST", null, null, DataType.URI));
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_PROD_IN", "AMBER_PROD_IN", null, null, DataType.URI));
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_PRMTOP", "AMBER_PRMTOP", null, null, DataType.URI));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.info", null, DataType.URI));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.mdcrd", null, DataType.URI));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.out", null, DataType.URI));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.rst", null, DataType.URI));
        application.setApplicationInterfaceId(client.registerApplicationInterface(application));


        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), amodule.getAppModuleId(), "/N/u/cgateway/BigRed2/sandbox/amber_wrapper.sh", ApplicationParallelismType.SERIAL, "AmberBR2");
        deployment.setAppDeploymentId(client.registerApplicationDeployment(deployment));




        String date = (new Date()).toString();
        date = date.replaceAll(" ", "_");

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        SCPDataMovement scpDataMovement = new SCPDataMovement();
        scpDataMovement.setSecurityProtocol(SecurityProtocol.GSI);
        scpDataMovement.setSshPort(22);
        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);
        ApplicationModule amodule = DocumentCreatorUtils.createApplicationModule("Amber", "12.0", null);
        amodule.setAppModuleId(client.registerApplicationModule(amodule));




        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
        application.setApplicationName("AmberBR2");
        application.addToApplicationModules(amodule.getAppModuleId());
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_HEAT_RST", "AMBER_HEAT_RST", null, null, DataType.URI));
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_PROD_IN", "AMBER_PROD_IN", null, null, DataType.URI));
        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_PRMTOP", "AMBER_PRMTOP", null, null, DataType.URI));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.info", null, DataType.URI));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.mdcrd", null, DataType.URI));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.out", null, DataType.URI));
        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.rst", null, DataType.URI));
        application.setApplicationInterfaceId(client.registerApplicationInterface(application));


        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), amodule.getAppModuleId(), "/home1/01437/ogce/production/app_wrappers/amber_wrapper.sh", ApplicationParallelismType.SERIAL, "AmberStampede");
        deployment.setAppDeploymentId(client.registerApplicationDeployment(deployment));


        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/home1/01437/ogce", "TG-STA110014S", false, null, null, null));

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