Package org.apache.airavata.gfac

Examples of org.apache.airavata.gfac.ToolsException

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        if (app.getMaxWallTime() > 0) {
            log.debug("Setting max wall clock time to " + app.getMaxWallTime());

            if (app.getMaxWallTime() > 30 && app.getQueue() != null && app.getQueue().getQueueName().equals("debug")) {
                throw new ToolsException("NCSA debug Queue only support jobs < 30 minutes");
            }

            jobAttr.setMaxWallTime(app.getMaxWallTime());
            jobAttr.set("proxy_timeout", "1");
        } else {
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                    }
                    break;
                } catch (ServerException e) {
                    tryCount++;
                    if (tryCount >= 3) {
                        throw new ToolsException(e.getMessage(), e);
                    }
                    Thread.sleep(10000);
                } catch (IOException e) {
                    tryCount++;
                    if (tryCount >= 3) {
                        throw new ToolsException(e.getMessage(), e);
                    }
                    Thread.sleep(10000);
                }
            }
        } catch (ServerException e) {
            throw new ToolsException("Cannot Create GridFTP Client to:" + destHost.toString(), e);
        } catch (IOException e) {
            throw new ToolsException("Cannot Create GridFTP Client to:" + destHost.toString(), e);
        } catch (InterruptedException e) {
            throw new ToolsException("Internal Error cannot sleep", e);
        } finally {
            if (destClient != null) {
                try {
                    destClient.close();
                } catch (Exception e) {
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            });

            log.info("Upload file to:" + remoteFile + " is done");

        } catch (ServerException e) {
            throw new ToolsException("Cannot upload file to GridFTP:" + contactInfo.toString(), e);
        } catch (IOException e) {
            throw new ToolsException("Cannot upload file to GridFTP:" + contactInfo.toString(), e);
        } catch (ClientException e) {
            throw new ToolsException("Cannot upload file to GridFTP:" + contactInfo.toString(), e);
        } finally {
            if (ftpClient != null) {
                try {
                    ftpClient.close();
                } catch (Exception e) {
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            srcClient.transfer(srcURI.getPath(),destClient, remoteFile, false, null);

            log.info("Upload file to:" + remoteFile + " is done");

        } catch (ServerException e) {
            throw new ToolsException("Cannot upload file to GridFTP:" + destContactInfo.toString(), e);
        } catch (IOException e) {
            throw new ToolsException("Cannot upload file to GridFTP:" + destContactInfo.toString(), e);
        } catch (ClientException e) {
            throw new ToolsException("Cannot upload file to GridFTP:" + destContactInfo.toString(), e);
        } finally {
            if (srcClient != null) {
                try {
                    srcClient.close();
                } catch (Exception e) {
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            ftpClient.put(localFile, remoteFile, false);

            log.info("Upload file to:" + remoteFile + " is done");

        } catch (ServerException e) {
            throw new ToolsException("Cannot upload file to GridFTP:" + contactInfo.toString(), e);
        } catch (IOException e) {
            throw new ToolsException("Cannot upload file to GridFTP:" + contactInfo.toString(), e);
        } catch (ClientException e) {
            throw new ToolsException("Cannot upload file to GridFTP:" + contactInfo.toString(), e);
        } finally {
            if (ftpClient != null) {
                try {
                    ftpClient.close();
                } catch (Exception e) {
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            ftpClient.get(remoteFile, localFile);

            log.info("Download file to:" + localFile + " is done");

        } catch (ServerException e) {
            throw new ToolsException("Cannot download file from GridFTP:" + contactInfo.toString(), e);
        } catch (IOException e) {
            throw new ToolsException("Cannot download file from GridFTP:" + contactInfo.toString(), e);
        } catch (ClientException e) {
            throw new ToolsException("Cannot download file from GridFTP:" + contactInfo.toString(), e);
        } finally {
            if (ftpClient != null) {
                try {
                    ftpClient.close();
                } catch (Exception e) {
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            log.info("finish read file:" + localTempfile);

            return buff.toString();
        } catch (FileNotFoundException e) {
            throw new ToolsException("Cannot read localfile file:" + localTempfile, e);
        } catch (IOException e) {
            throw new ToolsException("Cannot read localfile file:" + localTempfile, e);
        } finally {
            if (instream != null) {
                try {
                    instream.close();
                } catch (Exception e) {
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            } else {
                log.debug("****CHECK SUM FAILED****");
            }

        } catch (ServerException e) {
            throw new ToolsException("Cannot transfer file from GridFTP:" + srchost.toString() + " to "
                    + desthost.toString(), e);
        } catch (IOException e) {
            throw new ToolsException("Cannot transfer file from GridFTP:" + srchost.toString() + " to "
                    + desthost.toString(), e);
        } catch (ClientException e) {
            throw new ToolsException("Cannot transfer file from GridFTP:" + srchost.toString() + " to "
                    + desthost.toString(), e);
        } finally {
            if (destClient != null) {
                try {
                    destClient.close();
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            if (fileInfo.get(j) instanceof MlsxEntry) {
              name = ((MlsxEntry) fileInfo.get(j)).getFileName();
            } else if (fileInfo.get(j) instanceof FileInfo) {
              name = ((FileInfo) fileInfo.get(j)).getName();
            } else {
              throw new ToolsException("Unsupported type returned by gridftp " + fileInfo.get(j));
            }

            if (!name.equals(".") && !name.equals("..")) {
              URI uri = GFacUtils.createGsiftpURI(contactInfo.hostName, dirURI.getPath() + File.separator + name);
              files.add(uri.getPath());
            }
          }
        }
        return files;
      } catch (IOException e) {
        throw new ToolsException("Could not list directory: " + dirURI.toString() ,e);
      } catch (ServerException e) {
        throw new ToolsException("Could not list directory: " + dirURI.toString() ,e);
      } catch (ClientException e) {
        throw new ToolsException("Could not list directory: " + dirURI.toString() ,e);
      } catch (URISyntaxException e) {
        throw new ToolsException("Error creating URL of listed files: " + dirURI.toString() ,e);
      } finally {
        if (srcClient != null) {
                  try {
                      srcClient.close();
                  } catch (Exception e) {
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                    }
                    break;
                } catch (ServerException e) {
                    tryCount++;
                    if (tryCount >= 3) {
                        throw new ToolsException(e.getMessage(), e);
                    }
                    Thread.sleep(10000);
                } catch (IOException e) {
                    tryCount++;
                    if (tryCount >= 3) {
                        throw new ToolsException(e.getMessage(), e);
                    }
                    Thread.sleep(10000);
                }
            }
        } catch (ServerException e) {
            throw new ToolsException("Cannot Create GridFTP Client to:" + destHost.toString(), e);
        } catch (IOException e) {
            throw new ToolsException("Cannot Create GridFTP Client to:" + destHost.toString(), e);
        } catch (InterruptedException e) {
            throw new ToolsException("Internal Error cannot sleep", e);
        } finally {
            if (destClient != null) {
                try {
                    destClient.close();
                } catch (Exception e) {
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Related Classes of org.apache.airavata.gfac.ToolsException

  • org.apache.airavata.gfac.external.GridFtp
  • org.apache.airavata.gfac.gram.external.GridFtp
  • org.apache.airavata.gfac.utils.GramRSLGenerator
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