Package net.sf.mzmine.util

Examples of net.sf.mzmine.util.StreamCopy

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    InputStream scanInputStream = zipFile.getInputStream(scansEntry);
    FileOutputStream fileStream = new FileOutputStream(tempFile);

    // Extracts the scan file from the zip project file to the temporary
    // folder
    copyMachine = new StreamCopy();
    stepNumber++;
    copyMachine.copy(scanInputStream, fileStream, scansEntry.getSize());
    fileStream.close();

    stepNumber++;
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          + ExceptionUtils.exceptionToString(e));
    }

    FileInputStream fileStream = new FileInputStream(tempConfigFile);

    StreamCopy copyMachine = new StreamCopy();
    copyMachine.copy(fileStream, zipStream);

    fileStream.close();
    tempConfigFile.delete();
  }
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    InputStream scanInputStream = zipFile.getInputStream(scansEntry);
    FileOutputStream fileStream = new FileOutputStream(tempFile);

    // Extracts the scan file from the zip project file to the temporary
    // folder
    copyMachine = new StreamCopy();
    stepNumber++;
    copyMachine.copy(scanInputStream, fileStream, scansEntry.getSize());
    fileStream.close();

    stepNumber++;
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    InputStream scanInputStream = zipFile.getInputStream(scansEntry);
    FileOutputStream fileStream = new FileOutputStream(tempFile);

    // Extracts the scan file from the zip project file to the temporary
    // folder
    copyMachine = new StreamCopy();
    stepNumber++;
    copyMachine.copy(scanInputStream, fileStream, scansEntry.getSize());
    fileStream.close();

    stepNumber++;
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    }

    InputStream configInputStream = zipFile.getInputStream(configEntry);
    File tempConfigFile = File.createTempFile("mzmineconfig", ".tmp");
    FileOutputStream fileStream = new FileOutputStream(tempConfigFile);
    StreamCopy copyMachine = new StreamCopy();
    copyMachine.copy(configInputStream, fileStream);
    fileStream.close();

    try {
      MZmineCore.getConfiguration().loadConfiguration(tempConfigFile);
    } catch (Exception e) {
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    InputStream scanInputStream = zipFile.getInputStream(scansEntry);
    FileOutputStream fileStream = new FileOutputStream(tempFile);

    // Extracts the scan file from the zip project file to the temporary
    // folder
    copyMachine = new StreamCopy();
    stepNumber++;
    copyMachine.copy(scanInputStream, fileStream, scansEntry.getSize());
    fileStream.close();

    stepNumber++;
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Related Classes of net.sf.mzmine.util.StreamCopy

  • net.sf.mzmine.modules.projectmethods.projectload.ProjectOpeningTask
  • net.sf.mzmine.modules.projectmethods.projectload.version_2_0.RawDataFileOpenHandler_2_0
  • net.sf.mzmine.modules.projectmethods.projectload.version_2_3.RawDataFileOpenHandler_2_3
  • net.sf.mzmine.modules.projectmethods.projectload.version_2_5.RawDataFileOpenHandler_2_5
  • net.sf.mzmine.modules.projectmethods.projectload.version_2_5_fiehnlab.RawDataFileOpenHandler_2_5_FiehnlabFork
  • net.sf.mzmine.modules.projectmethods.projectsave.ProjectSavingTask
  • java.nio.ByteBuffer
  • java.nio.channels.WritableByteChannel
  • java.nio.channels.ReadableByteChannel
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